Gene Vapar_4403 details

Gene Information

• Locus tag: Vapar_4403
• ID: 7974077
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4644991
• End bp: 4646844
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644794992
• Product: feruloyl-CoA synthase
• Protein accession: YP_002946280
• Protein GI: 239817370
• COG category: [I] Lipid transport and metabolism; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCACCA TCCGATACCG TCCGCTGGCC TTCGGCGTCA CGCGCGCCGT GCTGCGCCAA 
GGTGCGCCGG GCACGCAGTA CCTGCGGGCT GAAACCCAGC TCGCGCCCTA CCGCGACCGC 
ATGACCGACC GCCTCGCGCA CTGGGCCGAA CAGGCGCCCG AGCGCACCTT CATCGCCCGC 
CGCGAACGGC TGGCCGATGG CAGCACCGGC GACTGGCAGC GCGTGAGCTA CGCCGAGGCG 
CTGCACAAGG CGCGCGGCAT CGGCCAGGCG CTGCTCGATC GCGGCCTGAG CGCGGAGCGC 
CCGGTCGCGA TCCTGAGCGA GAACGGTATC GAGCATGCGC TGATGGCGCT CGGCTGCCTC 
TATGCGGGCG TGCCGTACTG CCCGGTGTCG CCGCCCTACT CTGTGGTGAG CCAGGACTTC 
GAGAAGCTGC GCCACGTGCT GGACACGCTC ACGCCCGGCC TGGTGTTCGC GGCCGATGCC 
GCGCGCTTCG GCCGCGCCAT TGCCGCCACC GTGCCTGCCG GGACCGAAGT GGTGATCGCC 
GAAGGTGCGA TCGAAGGCCG CGCCACCACC TCGTTCGATG CGCTGGCCGC CACGCCGGCC 
ACGCCCGCCA TCGATGCCGC GATGCGCGCC ACCGGCCCCG ACACCATCAC CAAGTTCCTC 
TTCACCTCGG GCTCCACCAA GATGCCCAAG GCCGTGATCA ACACGCACCG CATGTGGTGC 
GCCAACCAGC AGCAGTTGCG CCAGTCGATT CCCGCCCTGG GCGAGGAGCC GCCGGTGCTG 
GTCGACTGGC TGCCCTGGAA CCACACCTTC GGCGGCAACC ACAACGTGGG CATCGTGCTG 
GACAACGGCG GCACGCTCTA CATCGACGAC GGCAAGCCCA CGCCCGCCGG CATGGCCGAG 
ACGCTGCGCA ACCTGCGCGA GATCGCGCCC ACCATCTACT TCAACGTGCC GACCGGCTTC 
GAGGCCATCG CGCACGCCAT GGAAACCGAC GCGGTGCTGC GGCGCAACCT GCTGTCGCGC 
GTGAAGATGT TCTTCTACTC GGGCGCCGCG CTCTCGCAGC CCGTGTGGGA CAGCCTGCAC 
AAGACGCAGG AGTCCGAAGT CGGCGAGCGC ATCGTGATGG GCACCGGCCT CGGCATGACC 
GAATCGGGGC CGTTCGCGCT CTACGTCACG GGGCCCGAGG TCAAGTCGGG CGACGTGGGC 
CTGCCCGCGG CCGGCATCGA GCTCAAGCTG ATCGAGGTCG ACGGCAAGAC CGAGGTGCGC 
TACCGCGGCC CCAACATCAC GCCCGGCTAC TGGCGCGCGC CCGAGGCCAC GGCCGAAGCC 
TTCGACGAAG AGGGCTTCTT CTCGACCGGC GACGCGGTGA AGTGGATCGA CGAGTCGAAC 
ATCCACCGCG GGCTGCGCTT CGACGGCCGC ATTGCCGAGG ACTTCAAGCT CGCCACCGGC 
ACCTTCGTGA GCGTCGGTCC GCTGCGCGCC AAGATCATCG CGGCCGGCGC GCCCTACGTG 
CAGGACGCGG TGCTGACCGG CATCAACCTG AAGGAAGTCG GCGCGCTGGT CTTTCCGACG 
CAGAAGGTGC GGGAACTGGC CGGCCTGCCC GAAGGCGCAT CGATGCAGCA GGTGCTCGAA 
AGCGCGCCGG TGCAGGCGCA CTTCCAGCAG GTGGCCAATG CGCTGGCGGC CATGGGCACC 
GGCAGCGCCA ACCGCATCGC GCGGCTGCAC CTGATGGCCG AGCCGCCTTC CATCGACAAG 
GGCGAAGTGA CCGACAAGGG CTCCATCAAC CAGCGCGCCG TGCTCAAGCA CCGCGCCGAG 
CTCGTCGAGG CGCTGCATGC CGACACCCTG CCCTTCACCC TGAAGCCCCG CTGA 

 

Protein sequence

MTTIRYRPLA FGVTRAVLRQ GAPGTQYLRA ETQLAPYRDR MTDRLAHWAE QAPERTFIAR 
RERLADGSTG DWQRVSYAEA LHKARGIGQA LLDRGLSAER PVAILSENGI EHALMALGCL 
YAGVPYCPVS PPYSVVSQDF EKLRHVLDTL TPGLVFAADA ARFGRAIAAT VPAGTEVVIA 
EGAIEGRATT SFDALAATPA TPAIDAAMRA TGPDTITKFL FTSGSTKMPK AVINTHRMWC 
ANQQQLRQSI PALGEEPPVL VDWLPWNHTF GGNHNVGIVL DNGGTLYIDD GKPTPAGMAE 
TLRNLREIAP TIYFNVPTGF EAIAHAMETD AVLRRNLLSR VKMFFYSGAA LSQPVWDSLH 
KTQESEVGER IVMGTGLGMT ESGPFALYVT GPEVKSGDVG LPAAGIELKL IEVDGKTEVR 
YRGPNITPGY WRAPEATAEA FDEEGFFSTG DAVKWIDESN IHRGLRFDGR IAEDFKLATG 
TFVSVGPLRA KIIAAGAPYV QDAVLTGINL KEVGALVFPT QKVRELAGLP EGASMQQVLE 
SAPVQAHFQQ VANALAAMGT GSANRIARLH LMAEPPSIDK GEVTDKGSIN QRAVLKHRAE 
LVEALHADTL PFTLKPR