Gene Vapar_4340 details

Gene Information

• Locus tag: Vapar_4340
• ID: 7970530
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 4585594
• End bp: 4587561
• Gene Length: 1968 bp
• Protein Length: 655 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644794928
• Product: hypothetical protein
• Protein accession: YP_002946217
• Protein GI: 239817307

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0246276
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGCCGCT CTTTCAATCA ACAACTCGAT CAGCACGGTG CCTGGCGGAG CAATTTCGCG 
CACCGCCTGC AGTGGCTGTC CCGCTGGCTG ACCGAGAACG AGCTGCTCGA CCAGGCGGTG 
GCCGAGCGCC TGCGCGGCCT CGAGCTGCAG ATCCGCACCA GCAAGGTCAT GGTGGCCTTC 
GTGGCGGAGT TCTCGCGCGG CAAGTCGGAA CTCATCAACG CAATCTTCTT TGCCGCCTAC 
GGTCGCCGCA TCATGCCGGC CAGCGCCGGG CGCACCACGA TGTGCCCGAC CGAGCTGGGC 
TACGACGCCG CGCTGTCGCC CAAGCTGCGG CTGCTGCCGA TCGAGACCCG CCTGGAACCC 
CATTCGCTCA CGCACTGGCG CGAAAAGGCC GGGCGCTGGA CCGAAATTGC GATCGACGTG 
GGCAACGCCG ACCAGCTGGC TCAGGCCATG AGCAAGGTGG CCGAAGTGCG CTGGGTCAGC 
AAGGACGAGG CGCACGCGCT GGGCTTCTGG AACGAGGAGA CGCCCGACGA CAACCCCGTG 
CAGGACGCCG AAGGCCGCGT CGAGATTCCG CGCTGGCGCC ACGCCATCCT GAACATGCCG 
CATCCGCTGC TGGAGCAGGG GCTGGTGATC CTCGATACCC CGGGCCTGAA CGCCATCGGC 
GCCGAGCCCG AGCTCACGGT GAGCCTGATC CCGCAGGCGC ATGCCGTGGT CTTCATCCTG 
GGCGCAGAAA CGGGCGTGAC GCGTTCCGAC CTGTCGATCT GGCGCGAGCA CCTGGTCACC 
GAAAGCGAAG GCAGCGACAC GCGCTTCGTG GTGCTCAACA AGATCGACAC CATGTGGGAC 
TCGCTGAGCA CGCCCGCGCA GATCGAGCTG CAGATCGAAC GCCAGCGCGA GGTTGCGGCC 
AAGTTCCTCG AGGTGCCGCT GGTGCAGGTG CTGCCGGTGT CGGCGCAGAA GGGTCTGCAG 
GCAAAGATCC AGCGCGATGC GCGGCTGCTC GACGCCAGCC GCCTGCCGGC CTTCGAGACG 
CTGCTCGCTG AAGGCGTGCT CGGCAAGCGC GAAACCATGC TGCGGCTCGC GGTGGATGCC 
GGCATGGTGG CACTGCGGAC CGAGGCCGAG CGCATCCTGA AAGTGCGCCA GCGCGACCTG 
TCGGAGCAGG CGCTCGAGCT GCAGGGATTG CGCGGCAAGA ACGTGTCGGT CATTCGGCAC 
ATGCGCGCGC GCATCGACCA GGAACAGACC GAGTTCGAGG GCAGCAACAC GCGCATCCTC 
GCGCTGCGTT CGGTGCAGGG CAAGCTGCTG CGCGAGGTGT ATGCCGTGCT CGGCCGCACC 
GCGCTCAAGG AAGACATGGT GCGGCTTTCG GCCGCGCTCA AGCGCCCGGG TGTCAAGTTC 
AACGTGCGCA AGGTGTACGG CGAAACCTTT GACTCACTGC GCAACAACCT GCGCGAAGTG 
CAGGCCACGA CGGCCGAGAT CCAATCGATG CTGCACGCCA CCTTCCGCCA GCTCAACGCG 
GAACAGGGCT TCACCTTGCA GGCGCCCGCC GAGCCCGACC TGACGAGCTT CGAGCAGGAG 
CTCAGCCAGA TCGAGCGCAG CCACATCCAC TACCTGGGCG TGGGCAACCT GCTGAAGCTC 
GCGCAGGCGG ACTTCTGCGA CAAGCTGGTG CGCGCGCTCG CAAGCCGCCT GCGGCTGGTC 
AACGAAGCGG CCATGACCGA GGTCGAACGC TGGAGCAAGG GTGCCAGCGC CCAGATCGAT 
GCGCAGCTCA AGGAGCGGCG CCGCAATTTC AGCAAGCGCA TCGAGGCGAT CGAGCGCATC 
CAGAATGCAG CAGGCAACCT CGACGAACGC CTGCTCGAGC TGGCCCAGCA GGAAAGCAGC 
CTGGCCGAGC TGCAGCTTCG GCTCCATGAA TTCACCTCGG CCATCGCGCA ACAGGGGAGG 
CCGGCAGCAG CCGCTGCCGC CGTCGGCGAG CTGCGTGCGG CGGCCTGA 

 

Protein sequence

MSRSFNQQLD QHGAWRSNFA HRLQWLSRWL TENELLDQAV AERLRGLELQ IRTSKVMVAF 
VAEFSRGKSE LINAIFFAAY GRRIMPASAG RTTMCPTELG YDAALSPKLR LLPIETRLEP 
HSLTHWREKA GRWTEIAIDV GNADQLAQAM SKVAEVRWVS KDEAHALGFW NEETPDDNPV 
QDAEGRVEIP RWRHAILNMP HPLLEQGLVI LDTPGLNAIG AEPELTVSLI PQAHAVVFIL 
GAETGVTRSD LSIWREHLVT ESEGSDTRFV VLNKIDTMWD SLSTPAQIEL QIERQREVAA 
KFLEVPLVQV LPVSAQKGLQ AKIQRDARLL DASRLPAFET LLAEGVLGKR ETMLRLAVDA 
GMVALRTEAE RILKVRQRDL SEQALELQGL RGKNVSVIRH MRARIDQEQT EFEGSNTRIL 
ALRSVQGKLL REVYAVLGRT ALKEDMVRLS AALKRPGVKF NVRKVYGETF DSLRNNLREV 
QATTAEIQSM LHATFRQLNA EQGFTLQAPA EPDLTSFEQE LSQIERSHIH YLGVGNLLKL 
AQADFCDKLV RALASRLRLV NEAAMTEVER WSKGASAQID AQLKERRRNF SKRIEAIERI 
QNAAGNLDER LLELAQQESS LAELQLRLHE FTSAIAQQGR PAAAAAAVGE LRAAA