| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4312 |
|---|
| Symbol | |
|---|
| ID | 7970499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4555087 |
|---|
| End bp | 4555863 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644794898 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002946190 |
|---|
| Protein GI | 239817280 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAG ATCTTTTTTC TCTGCGAGGC CGCACGGCTC TCGTCACGGG TGGCTCACGG
GGTATTGGTC GCATGATCGC CGAGGGATTC TTGGCGCAAG GTGCACGCGT CTACATCAGC
GCGCGTAAAG CTTCGGCATG CGATCTGGCG GCTTCGGAAC TGTCGAAGAA CGGCCATTGC
GTCTCGCTGC CCTACGACGT CTCGACGGTC AACGGATGCC AGGCCCTGGC CGCTGCCTAC
GTGCAGCATG AAACCACCTT GGACATCCTG GTCAACAACG CCGGCACTGC CTGGGGAGAA
GACTTCGATG CTTTCCCCGA AAGCGGCTGG GACAAGGTGG TCGATCTCAA CATGAAGACA
CCCTTCTTCT TGACGAAGGC GCTGTCCGAA CCGCTGCGCG CCGCGGCCAA GGAGCGTGTG
GGGAAGATCA TCAACATTGC GTCCACGGAT GGCATCGCGC TCAACCCTCA GGAAAATTAC
TCCTACGTCG CCAGCAAGGC GGGCTTGATT CACCTGACCC GGCGCATGGC ACTGCGCCTG
GCGCAAGACA ACATCGCGGT CAGTGCCATT GCACCTGGCG CGTTTCCATC CGAGATGAAC
CGCAACGCAC GCGACCGCGG CGACGAACTG TCCGAACACA TACCCGCCAG ACGCATCGGC
ACTTCAGAGG ACATCGCAGG CGCGGCGATC TTCCTGGCAT CGCGTGCAGG TGACTACGTG
ATGGGCGCTA CCCTGGTGGT GGACGGTGGG GTGACCCACG CCCGGGCTTA CAGGTGA
|
|---|
| Protein sequence | MTQDLFSLRG RTALVTGGSR GIGRMIAEGF LAQGARVYIS ARKASACDLA ASELSKNGHC
VSLPYDVSTV NGCQALAAAY VQHETTLDIL VNNAGTAWGE DFDAFPESGW DKVVDLNMKT
PFFLTKALSE PLRAAAKERV GKIINIASTD GIALNPQENY SYVASKAGLI HLTRRMALRL
AQDNIAVSAI APGAFPSEMN RNARDRGDEL SEHIPARRIG TSEDIAGAAI FLASRAGDYV
MGATLVVDGG VTHARAYR
|
|---|
| |