Gene Vapar_4294 details

Gene Information

• Locus tag: Vapar_4294
• ID: 7970481
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4538020
• End bp: 4538661
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644794880
• Product: isochorismatase hydrolase
• Protein accession: YP_002946172
• Protein GI: 239817262
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG1335] Amidases related to nicotinamidase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTTCG ATCAAGACAT CTACCAGAAG CAAGGGTTCG GCAATGCCGT GGCGCCCATG 
GCGCCCTACG GACTGTTGAT CATCGACTTC ATCAATGGTT TCGCCGATCC GTTCACGTTC 
GGCGGCGGCA ACATCGGCCC CGCCATCGAA TGCACGCGCG GGCTTCTCGC CCAAGCCCGC 
CAGCGCCAAT GGCCGGTCGT GCACACGCGG GTCGTGTATC AGGACGATGG CGCCGACGCC 
AACATCTTCG CGCTCAAGGT GCCCCCCATC CTTGCCCTGC GCGAGGATGC GCCCGAAAGC 
CAGATCGTGC CGCAATTACA GCCGGTGGCC GGGGAGTTGG TGCTGCGCAA GACAAGTCCC 
TCGGCCTTCT TCGGAACTTC GCTGGCCGCC TGGTTGTCCC TGCGCGGCAT ACGGACCCTC 
CTGATTGCCG GGTGCACGAC CAGCGGCTGT GTCCGCGCCA GTGTGGTCGA CGCCATGTGC 
CACGGGTTCC GCCCCCTCGT CGTCACCGAC TGCGTGGGGG ACCGGTCGCT GCAGGCCCAC 
GAGGCCAACC TGTTCGACAT GGATCAGAAG TACGCGACCT TGATGGCCCG TGATGTCGCC 
CTTGAAGCGA CCACCAAAGC AGAAAACGTC GCCTCGGTCT GA 

 

Protein sequence

MSFDQDIYQK QGFGNAVAPM APYGLLIIDF INGFADPFTF GGGNIGPAIE CTRGLLAQAR 
QRQWPVVHTR VVYQDDGADA NIFALKVPPI LALREDAPES QIVPQLQPVA GELVLRKTSP 
SAFFGTSLAA WLSLRGIRTL LIAGCTTSGC VRASVVDAMC HGFRPLVVTD CVGDRSLQAH 
EANLFDMDQK YATLMARDVA LEATTKAENV ASV