| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4274 |
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| Symbol | |
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| ID | 7971358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4515995 |
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| End bp | 4516888 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794861 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002946153 |
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| Protein GI | 239817243 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTCG ACTCCACCAC CGTCCAGCTG GTCCTGTGCA TCGCCGAGGA AGGCAGCATC
TCCCGGGCTG CCGACCGGCT GAACCTGGCG GTGGCGGCCG CCTCCAAGCG CGTGAGCGAC
CTGGAGGCGC AGCTGGGCGC CAGGCTGTTC AAGCGGGTGG CGCACGGCGT GCTCGTCACC
GAGGCCGGCA ACCGGCTGAT GGCGCACATC CGGCAGATCG ACAACCTCAT CGGCCGGCTC
GAGGGCGATG CCCAGGTGCT GGGGCGCGGG CAGGACGGGC GCATTCTCAT CGGCGCGCCG
AAGGCGGCCA TCATCCAGTT CCTGGCGAAG GACATCGCCC GGCTGCGTGA CGCCTACCCG
CAGATCACGC TGAAGATCCT GGAAGAGAAC AGCAAGATCG TGCAGCAGCT GCTGCGCGAC
AAGGTGATCG ACGTCGGCAT CTACGAGAAG AAGAGCGGGT TCCTGGACCT GCCGAAGTTC
GACTACCGGC AGGACCGGCT GGTGCTCGTG TACAGCCGCC GGCATTTCCA GTTTGCGGCG
CAGCGGCCGG TGGGCATCGA CGACTTCCTG GACCTGCCGG TGGTGAGCCT CGGCAAGGGC
TCGGCGATCC TGTCGGCCTT GCAAGGGGCC TACCGCAGCC GCGGCCGGTC GTTCCCCAAC
AACTTCTCGA CCAGCGGCTT CGACACCATG CTGGCGCTGG TGCGCCATGG CCTGGGTGTG
GGCCTGATGC CGCCCGAGGT GCTGCGCAGC TTCCATCCGG AAGACGACCT GGGCTGGGCC
GAGATCGAGG GCGACTGGCA CCAGCGCGCC TATGTGCTGT CGTGTGTCGA AGGCCATGCG
CAGGAGCAGA CCCTGCGCAA CGTGGTGGCC CAGCTGATCG GCAGCAGCAC TTAG
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| Protein sequence | MKLDSTTVQL VLCIAEEGSI SRAADRLNLA VAAASKRVSD LEAQLGARLF KRVAHGVLVT
EAGNRLMAHI RQIDNLIGRL EGDAQVLGRG QDGRILIGAP KAAIIQFLAK DIARLRDAYP
QITLKILEEN SKIVQQLLRD KVIDVGIYEK KSGFLDLPKF DYRQDRLVLV YSRRHFQFAA
QRPVGIDDFL DLPVVSLGKG SAILSALQGA YRSRGRSFPN NFSTSGFDTM LALVRHGLGV
GLMPPEVLRS FHPEDDLGWA EIEGDWHQRA YVLSCVEGHA QEQTLRNVVA QLIGSST
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