Gene Vapar_4261 details

Gene Information

• Locus tag: Vapar_4261
• ID: 7971345
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4501513
• End bp: 4503522
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644794848
• Product: AsmA family protein
• Protein accession: YP_002946140
• Protein GI: 239817230
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2982] Uncharacterized protein involved in outer membrane biogenesis

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.545183
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATCAT CGATGTTTCC CCGCGCCGTG GGCTGGGGCC TGCTTCTGCT GTCGGCCCTC 
GCGGCGCTGT GCATCGCGGT CCTGTTGAGC TTCGACTGGA ACCGCGCCCG GCCCTGGATC 
AACCAGCGCG TGAGCGAAGC AACCGGCCGC CCGTTCGCGA TCCGCGGCGA CCTGGCGCTG 
CAGTGGTCGA GCCCCGAAGC CGAAACGGGC TGGCGCCGCT GGGTGCCCTG GCCGAGGCTG 
AGCGCACAGG ACATCACGCT GGGCAATGCC GACTGGGGCA AGACCGGCCC GCACCTGGCC 
GAGATCCGGC AGCTGACCTT CTCGCTGAAC CCGCTGCCCC TGCTGAACCA CACGATCCGC 
ATTCCCACGC TCGAGCTCGC CGGCCCCGTT CTTTCGCTCG AACGCACCGC GGAAGGCAAG 
AACAACTGGA CGCTGGCCGC CGGCGGCGGC GCGGAGCCCT CGAGCTGGAA GCTCGACCTG 
CAGCGGCTGG TGCTGAGCCA GGGCACGGTG AAGCTGGCCG ATGCAACGGC AAGGCTCGAT 
CTCAAGGTCG ACATCGACAG CCTGCCCGCG GAAAGCGCCG AAGGCTACGG CATCGGCTGG 
AAGCTCGGCG GCACCTTCCG CCAGACGCCG GTGCAGGGAA GCGGCAAGGC CGGCGCCGTG 
CTCTCGCTGC AGCAGGACAC CAAGCCCTAC CCCTTGCAGG CCGGCGTGCA GGTGGGTGCC 
ACGCGCATCG ACATCGCCGG CACGCTGACC AAGCCCGACG CGCTGGCCGC GCTGGACCTG 
CGGCTCAAGC TGTCGGGCGC GAGCATGGCG CACCTGTATC CCATCACCGG CATCACGCTG 
CCCAACACGC CGCCGTTCAG CACCGAAGGC CACCTGGTCG GCAAGCTCGA CAAGGCCGGC 
GGGCGCTGGC TGTACGAGAA CTTCAAGGGC CGCGTGGGTG CCAGCGACAT TGCGGGCACG 
CTGGAGTACG TCTCGCAGCA GCCGCGGCCG CTGCTGCGCG GCCAGGTGCA GTCCAACCAG 
CTGCGGCTGG AAGACCTGGC GCCCTTGATC GGCGCCGATT CGAACGCGAG CAAGGCCAAG 
CGGGGCGCCC CGGCCGTCCA GCCGGCGGGC AAGGTGCTGC CGGTGGAGAA GTTCGATACC 
GCAAGCTGGG GCAGCATCGA TGCGGACGTC AAGTTTGCCG GCCGCAAGAT CTTCCACGCG 
AAGGACCTGC CCATCGACAG CCTGGTGGCG GATCTTCACC TGAAGGACAG CGTGCTCTCG 
CTCACGCCGT TGAGCTTTGG CGTGGCAGGC GGCACCGTGG CCGCCACGGT CAAGCTCGAC 
GGCCGGCAGG ACCCGATCCG CGCCAACCTG CAGCTGTCGG CGCGCCGGCT CCGGATCAAG 
GAACTCTTCC CGACGCTCGA CACCCTGCAG GCCAGCCTGG GCGAAGTCGG CGGCGACGCG 
GCGCTGTCCG CTTCCGGCAA CTCCGTCGCG GCCCTGCTGG GCACTTCGAA CGGCGAGGTG 
AAGGCGCTGG TGAGCAAGGG CACGGTGAGC AAGTTCCTGC TCGAGGCCAT GGGACTGAAC 
ATCGGCAGCG TGGTGGCGAC CCAGCTGTTC GGCGACAGGC AGGTCCAGCT GAACTGCCTG 
GCGAGCGACT TCAAGGTGAC GCAGGGCGTC ATGCAGACGC GCTCCTTCGT GCTGGACACG 
GACGAATCGG TCGTCAACGT GAGCGGGCTC ATCGATCTTT CCAAGGAACA GCTCGCGCTG 
GAGATCCAGC CGCGCAACAA GGCGCTGCGC GTTCTTTCGC TGCGCTCGCC GCTGTACGTC 
AAGGGCACGT TCAAGAACCC CGACGTCGGC GTCGACAAGG GCGCCGTGGC GCTCAAGCTG 
GGTTCCGCGA TTGCGCTGGG TGCAGTGGCG CCCGCCGCCG CGCTGCTGCC GCTCTTGAAC 
ATGGGCTCGC AGGAGTTCGC GCAATGCGCG CCGCTGGAGG CAGCCGCGCG CCAGAAGCCG 
AAGGCTGGCA AGCAGCCCGG GGCACGCTAG 

 

Protein sequence

MKSSMFPRAV GWGLLLLSAL AALCIAVLLS FDWNRARPWI NQRVSEATGR PFAIRGDLAL 
QWSSPEAETG WRRWVPWPRL SAQDITLGNA DWGKTGPHLA EIRQLTFSLN PLPLLNHTIR 
IPTLELAGPV LSLERTAEGK NNWTLAAGGG AEPSSWKLDL QRLVLSQGTV KLADATARLD 
LKVDIDSLPA ESAEGYGIGW KLGGTFRQTP VQGSGKAGAV LSLQQDTKPY PLQAGVQVGA 
TRIDIAGTLT KPDALAALDL RLKLSGASMA HLYPITGITL PNTPPFSTEG HLVGKLDKAG 
GRWLYENFKG RVGASDIAGT LEYVSQQPRP LLRGQVQSNQ LRLEDLAPLI GADSNASKAK 
RGAPAVQPAG KVLPVEKFDT ASWGSIDADV KFAGRKIFHA KDLPIDSLVA DLHLKDSVLS 
LTPLSFGVAG GTVAATVKLD GRQDPIRANL QLSARRLRIK ELFPTLDTLQ ASLGEVGGDA 
ALSASGNSVA ALLGTSNGEV KALVSKGTVS KFLLEAMGLN IGSVVATQLF GDRQVQLNCL 
ASDFKVTQGV MQTRSFVLDT DESVVNVSGL IDLSKEQLAL EIQPRNKALR VLSLRSPLYV 
KGTFKNPDVG VDKGAVALKL GSAIALGAVA PAAALLPLLN MGSQEFAQCA PLEAAARQKP 
KAGKQPGAR