| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4211 |
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| Symbol | |
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| ID | 7971294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4451801 |
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| End bp | 4452460 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794797 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002946090 |
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| Protein GI | 239817180 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTGG AGGGCGGCCT CTCGCGGCGC CGGTGCCTGG TGGGCGGCGC CGCGGCGGCG
GGCGCCCTGG CGGCGCTGTC GCTGCCGCAG GCCGCCCACG CCGGCGCGCA GATCGAGGAG
CCGCTGATCG ACTCGGTGCG CACCGCGCTG AGTTCGGCCG TGCACAACAA GGCGCCGCCG
GTGCCCGAGT TCTCGAGCAC CGAGGCCCGC CTGACCTACC TGCGCTGGCT GGGCGAGATG
AGCGAGCGCC TCAAGAAGAA GATTGCCGAC TGGCCCACGC GCAAGGAATT CCTGCAGACC
GCCTGGTATG AAGCCAAGCG CTCGGGCCTG GACGTGAGCC TGGTGCTCGG GCTGATCCAG
GTCGAGAGCA ACTTCCGCAA GTTCGCGGTG TCCAGCGCCG GTGCGCGCGG CTACATGCAG
GTCATGCCGT TCTGGACCCG CGTGATCGGC GACAGCGACC CGGCCAAGCT GTTCCACATG
CAGACCAACC TGCGCTTCGG CTGCGTGATC CTGCGCCACT ATCTCGACCG CGAGAACGGC
GACCTGTACA TGACCCTCGG GCGCTACAAC GGCAGCCGCG GCAAGGCGCC TTATCCCAAC
GCCGTGTTCG CGAACCAGCG CCTCTGGACC TTCGTGGACC GCGACCGCTC GGCCGCCTGA
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| Protein sequence | MSLEGGLSRR RCLVGGAAAA GALAALSLPQ AAHAGAQIEE PLIDSVRTAL SSAVHNKAPP
VPEFSSTEAR LTYLRWLGEM SERLKKKIAD WPTRKEFLQT AWYEAKRSGL DVSLVLGLIQ
VESNFRKFAV SSAGARGYMQ VMPFWTRVIG DSDPAKLFHM QTNLRFGCVI LRHYLDRENG
DLYMTLGRYN GSRGKAPYPN AVFANQRLWT FVDRDRSAA
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