Gene Vapar_4123 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4123 
Symbol 
ID7974445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4362047 
End bp4362667 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content65% 
IMG OID644794709 
Productprotein of unknown function DUF502 
Protein accessionYP_002946002 
Protein GI239817092 
COG category[S] Function unknown 
COG ID[COG2928] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.132754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCGCCC TGCGCAAATG GCTGTTCTCC GGCTTGCTGG TGATCGTTCC GCTGTTCATC 
ACCCTGGCGG TGCTGAAGTG GATCATCGAC ACGCTGGACC AGACGCTCTG GGTGCTGCCC 
TCGGTCTGGC AGAAATGGCT GTACGACAAC AACGTGCGCG GGCTCGGCGT GCTGCTCACG 
CTGGCCATCC TGCTGGGCGT GGGCGCCATT GCGAGCAATT TCGTGGGCAA GCGCCTGCTC 
GGATGGGGCG ACGCCGTGGT GCGGCGCATT CCCGTCGTGC GCTCGATCTA CTCCAGCGTC 
AAGCAGGTGT CCGACACGCT GTTCTCCGAG AACGGCAACG CCTTTCGCAC GGCGGTGCTG 
GTGCAGTGGC CGCGCGAGGG AGTCTGGACC ATCGCCTTCG TGACCGGCAC GCCGGGCAGC 
GAGGTCATTG GCCACCTGGG CGGCGGCGAC TACCTGGGTG TCTACGTTCC GACCACGCCC 
AACCCCACGG GCGGTTATTT CGTGATGCTC AGGCGCAGCG ACTGCATCGA ACTCAAGATG 
AGCGTGGACG AAGCGCTCAA GTACATCGTC TCGATGGGGG TGGTCGTTCC CGGCGGCCCG 
TCCTCCCTCG CGAACAAGTA A
 
Protein sequence
MLALRKWLFS GLLVIVPLFI TLAVLKWIID TLDQTLWVLP SVWQKWLYDN NVRGLGVLLT 
LAILLGVGAI ASNFVGKRLL GWGDAVVRRI PVVRSIYSSV KQVSDTLFSE NGNAFRTAVL 
VQWPREGVWT IAFVTGTPGS EVIGHLGGGD YLGVYVPTTP NPTGGYFVML RRSDCIELKM 
SVDEALKYIV SMGVVVPGGP SSLANK