Gene Vapar_4106 details

Gene Information

• Locus tag: Vapar_4106
• ID: 7974428
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 4348274
• End bp: 4350283
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644794692
• Product: AsmA family protein
• Protein accession: YP_002945985
• Protein GI: 239817075
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2982] Uncharacterized protein involved in outer membrane biogenesis

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.850545
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAACGA ACGTGCTTCG CGACCGGCCG CTCTGGCTCA AGCTGCTTGC GGCTTTCGTG 
CTGCTGCTTG CCGCGCTGGC GGTGCTGCTG GCGTTCTTTC CGTGGGACAC CTTGCGCGGA 
CCGGTCAACC GCTACGTCAG CGAGAAGACC GGGCGCAAGT TCGAGATCAC GCGCCGGCTC 
GACGTGGGCA TCGGCCTGCG TGGCGCCACC GTCAAGGCCG ACGGCATCGA GTTTGCCAAC 
CCGCCCTGGG CTCGCGAGCC CTACCTGGTG AAGGCCGAGC GCGCCGAGTT CGACATCCGG 
CTCTGGCCCC TCGTCTCGCG CAAGGTCGTG ATCCCGCGCC TGGCGCTGTC CTCGCCCACG 
CTGGGCCTGC AGATCGAGCC GGACGGGCGC CGCACGTGGG CGCTCGGCAA GGACACCTCC 
GATGCCGGCA CCGTGCCCGT CATCGGCCTG ATGCAGGTCG ACAGCGGCGC GGTCGACTTC 
CTGGCCACGC ACCTGGGCGT CGACCTGCAT GCGGACGTGA GCTACGACAC CAGCCGGGGA 
ACGCTCCCGC TCAGCTACCG CATCAAGGGC CGCTACAAGG GCCAGCCGCT GACGGCCGAG 
GGCCGCACCG GCAACGTGCT GCAGCTCAAG GCGGCCGGCC AGCCGCCGTT CCCGCTGGAG 
GTCGATGCCG CGGCCGGCCA GACACGGCTG AAGGCCTCGG GCACGGTGAC CGACTTTGCC 
GAGCTCGACG GCATCCAGGC CACGTTCGAC CTCAAGGGCC AGACCCTCGG CGCGCTGTTC 
CCGCTGCTGG GCATCGCGCT GCCGGAAACC TCTCCCTATG CGCTGAGCGG CGAGTTGCGC 
AAGCGCGGCA AGCTGTGGGA AGTGGCCGGG CTCAAGGGCC GGCTCGGCCT TTCCGACATC 
GCCGGCGACA TGCGCTTCGA CAAGGCCGGC CAGGTGCCGC ACCTGGCGGG GGAGCTGCGC 
TCCAAGGTCA TGGACATGGA CGACCTGGGC CCGCTCATCG GCCTGCCGCC GACCGAACGC 
TCGGCCAAGG CGGTCGAGGG CGTCGCGCCG CCGCCCACCA TCAAGGCGAA GCGTGCCCCG 
GGCGCCAAGG TACTGCCCAG CGCCAAGCTC GACTTCGAGC GCCTGCGCGC CATGAACGCC 
GAGGTCAAGT ACACGGCCGA CCGCATCCGC AACGTGCGCG ACGTGCCGCT CGACCGCGGC 
AGCGTGCAGG TCAAGCTGAA CAACGGCGTG CTGACGCTCG ATCCGCTCGA CCTGGGCGTG 
GGCGGCGGCA AGCTGGCCGG CGCGATCCGC ATCGACGGCG CGAAGGATCC GGCCGACATC 
CGCGCCTCGC TCGACCTGCG CGGCATGCAG CTCGCCCGGG TGTTTCCGAA GCTGGAGACC 
ACGGGCAACA GCGTGGGCCG GCTCGACGGC CGCATCAACC TGTCGGGCGC CGGCAATTCC 
GTGGCCAACT GGCTCGGAGG CGCTTCCGGC GACGTCGCGG TGATTTCCGG GCACGGCCAG 
TTCGGCAACC TGCTGCCGGT CTTCGCGACG CTCGTGGGGG GCGACATCAT CAAGTTCCTG 
CTGCGCGGCG ACCGCAACGT CGAGCTGCGC TGCGCGGCCA TGGCCTTCGA CGTGAACAAG 
GGGCTGATGA CCGGGCGCAC CCTCGTGCTG GACACGACCA ATGCCGTGTT CTATGCCACC 
GGCCAGGCCA ACCTCGCGAC CGAAACGCTC GACTTCGTGG TCCGCCCGGA GCCCAAGAGC 
AAGAACATCC TCTCGCTGCG CACGCCGCTG GTCATCGGCG GCACTTTCGG TTCGCCAACG 
GGCGGCGTCA AGGTGGTCCC GCTGGCAGGG CGCGGCCTGG CGGCGCTCGC GCTGGGCACC 
GTCAACCCGC TGCTGGGACT GGCCGCGACC ATCGAGACCG GACCGGGGCA GGATTCGGAC 
TGCAAGGGCG TGCTGTCGGA AGCGAATCGC CCGACCCCCG GAGCCCCCGC CAAGGGCGCC 
GCTCGGGCCA AGGGCGCCCG GCAGCCTTGA 

 

Protein sequence

MATNVLRDRP LWLKLLAAFV LLLAALAVLL AFFPWDTLRG PVNRYVSEKT GRKFEITRRL 
DVGIGLRGAT VKADGIEFAN PPWAREPYLV KAERAEFDIR LWPLVSRKVV IPRLALSSPT 
LGLQIEPDGR RTWALGKDTS DAGTVPVIGL MQVDSGAVDF LATHLGVDLH ADVSYDTSRG 
TLPLSYRIKG RYKGQPLTAE GRTGNVLQLK AAGQPPFPLE VDAAAGQTRL KASGTVTDFA 
ELDGIQATFD LKGQTLGALF PLLGIALPET SPYALSGELR KRGKLWEVAG LKGRLGLSDI 
AGDMRFDKAG QVPHLAGELR SKVMDMDDLG PLIGLPPTER SAKAVEGVAP PPTIKAKRAP 
GAKVLPSAKL DFERLRAMNA EVKYTADRIR NVRDVPLDRG SVQVKLNNGV LTLDPLDLGV 
GGGKLAGAIR IDGAKDPADI RASLDLRGMQ LARVFPKLET TGNSVGRLDG RINLSGAGNS 
VANWLGGASG DVAVISGHGQ FGNLLPVFAT LVGGDIIKFL LRGDRNVELR CAAMAFDVNK 
GLMTGRTLVL DTTNAVFYAT GQANLATETL DFVVRPEPKS KNILSLRTPL VIGGTFGSPT 
GGVKVVPLAG RGLAALALGT VNPLLGLAAT IETGPGQDSD CKGVLSEANR PTPGAPAKGA 
ARAKGARQP