| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4100 |
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| Symbol | |
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| ID | 7974422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4343816 |
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| End bp | 4344280 |
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| Gene Length | 465 bp |
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| Protein Length | 154 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794686 |
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| Product | protein-export protein SecB |
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| Protein accession | YP_002945979 |
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| Protein GI | 239817069 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1952] Preprotein translocase subunit SecB |
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| TIGRFAM ID | [TIGR00809] protein-export chaperone SecB |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.154363 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCCGACC AGCAAGCCCA AGATCCCGTT TTCCAGATCC AGCGCGTCTA CCTCAAGGAC
CTGTCGCTCG AACAGCCCAA TTCGCCCGCC ATCCTGCTCG AGCAGGAGCA GCCCACAGTC
GACATCCAGC TCGGCGTGGA CGCCCAGCCG GTGGCCGAAG GCATCTTCGA GATCACCGTG
TCGGCCACCG TGCAGACCAA GATCCAGGAC AAGACCGTGT TCCTGGTCGA AGCCAAGCAG
GCCGGCATCT TCGAGATCCG CAACCTGCCC GAAGACCAGA TGGGCCCGAT CCTGGGCATC
GCCTGCCCGC AGATCGTCTA TCCCTACCTG CGCGGCAACG TGGCCGACGT GATCCAGCGC
GGCGGCTTCC CGCCCGTGCA CCTGGCGGAA ATCAACTTCC AGGCGATGTA CGAGCAGCAG
CAGGCGCAGG CCGCCGGCCA GCCCTCGCCG ATCGTCACGC AGTAA
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| Protein sequence | MADQQAQDPV FQIQRVYLKD LSLEQPNSPA ILLEQEQPTV DIQLGVDAQP VAEGIFEITV
SATVQTKIQD KTVFLVEAKQ AGIFEIRNLP EDQMGPILGI ACPQIVYPYL RGNVADVIQR
GGFPPVHLAE INFQAMYEQQ QAQAAGQPSP IVTQ
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