| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4085 |
|---|
| Symbol | |
|---|
| ID | 7974407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4330333 |
|---|
| End bp | 4331307 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644794671 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002945964 |
|---|
| Protein GI | 239817054 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.445134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAG AAATCCGGGC CGTTTCGCTC GCGGCCGTGG CATGGCTCGC CTCGGCCGGT
GCGCTCGCGG ACAGCTACCC CTCGCGCCCG ATCACGCTGG TGGTGGGCTT CCCCGCCGGC
GGCGGCGCCG ACACGGTGGC GCGCATCGTG AGCGACAAGC TGGCCAAGAT CCTCGGCCAG
CCGATCGTCA TCGACAACAA GCCCGGTGCG GGCACCACCA TCGCGTCGGA CCAGGTCGCG
CGCGCGGCGC CCGACGGCTA CACGCTGCTG CTGGGCAGCG GCAACCTCTA TGGCAGCGAC
AAGCTGCTCT ACAAGGCCGT GAAGTACGAC GGCGCCAGGA GCTTCGTGCC CATCTCGCGC
TGGAGCTCCG CGCCGATGCT GCTCGCGGTC AACAAGGACG TGAGCGCGCA GAACGTGCAG
GCGCTCATCG CCCAGGCGCG GCAGAGCCCG GGCAAGCTGG CCTATTCGTC GTCGGGCACC
GGGGTGGTGA CGCACCTGGC GGGCCTGTCG TTCGAGAAGG CCGCCGGCGT GACCATGCTG
CACGTGCCGT ACAAGGGCGG CGCCCCGTCG ATCCAGGCCG TGGCGGCCAG CGACGTGCAG
CTGACCTTCG GCACACCGCC CTCGGTGCTG CCGATGGCGC AGGGCCAGAA GCTGCGCGTG
CTGGCCGTCA CCTCGGGCCA GCGCTCGCCG CTCTTTCCCG ACGTGCCGAG CGTCGCCGAG
GCCGGCGTGA AGGGCTATGA CTTCACCTTC TGTTTTGGCC TGTTCGCACC GGCCGGCCTG
CCGCCCGAGT TGGCGCAGAA GCTGTTCGAC GCCAGCGTGG CGGCGCTCAA CGATCCCGAG
GTGAAGGCGC GGCTCGAAAA ATCGGGCAAC GAGGCGGCGC CCTCGAAGTC GCTGGCCGAA
TTCCGCAGCT GGGCGCAGGC CGAAGGCACG AAATCGAAGG AACTCACCGA GCGCTCCGGC
GCGACCGTCG AATGA
|
|---|
| Protein sequence | MKKEIRAVSL AAVAWLASAG ALADSYPSRP ITLVVGFPAG GGADTVARIV SDKLAKILGQ
PIVIDNKPGA GTTIASDQVA RAAPDGYTLL LGSGNLYGSD KLLYKAVKYD GARSFVPISR
WSSAPMLLAV NKDVSAQNVQ ALIAQARQSP GKLAYSSSGT GVVTHLAGLS FEKAAGVTML
HVPYKGGAPS IQAVAASDVQ LTFGTPPSVL PMAQGQKLRV LAVTSGQRSP LFPDVPSVAE
AGVKGYDFTF CFGLFAPAGL PPELAQKLFD ASVAALNDPE VKARLEKSGN EAAPSKSLAE
FRSWAQAEGT KSKELTERSG ATVE
|
|---|
| |