| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4079 |
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| Symbol | |
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| ID | 7974401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4323605 |
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| End bp | 4324636 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794665 |
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| Product | Isocitrate dehydrogenase (NAD(+)) |
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| Protein accession | YP_002945958 |
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| Protein GI | 239817048 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCC CCATTCCCGC AACCCTGATT CCCGGCGATG GCATCGGCCC CGAGATCGTC
GACGCCACGC TGGCCGCGCT CGATGCGCTG AAGGCGCCCT TCGAATGGGA CCGCCAGATC
GCCGGCCTCG GCGGCGTCCA GGCCTCGGGC GATCCGCTGC CGCAGGCCAC GCTGGACAGC
ATCCGCCGCA CCCGACTGGC CCTCAAGGGC CCGCTCGAGA CGCCCTCGGG CGGCGGCTAC
CGCTCGTCGA ACGTGCGGCT GCGGGAGGAA TTCCAGCTCT ACGCCAACCT GCGCCCCGCG
CGCACCATCA TTCCGGGCGG CCGCTTCGAC AAGATCGACC TGATGGTCGT GCGCGAGAAC
CTCGAGGGCC TGTACATCGG CCACGAGCAC TATGTGCGCA TCGACGGCGA CCCGCACGCC
GTGGGCATGG CCACCGGCAT CAACACGCGC CAGGGCTGCC TGCGCCTGCT CGAATACGCC
TTCGAGACCG CCATTGCCGC CGGCCGCAAG AAGGTCACGC TGGTGCACAA GGCCAACATC
ATGAAGGTGC TGACCGGCCT GTTCCTGGAG ACGGGCCTCA GGCTCTACGA AGAGAAGTAC
AAGGGCAGGT TCGAGCTCGA CACCATCATC GTCGACGCCT GTGCGATGAA GCTGGTGCTC
AATCCGTGGC AGTTCGACAT GCTGGTGACG ACCAACCTGT TCGGCGACAT CCTGTCCGAC
CTGGTGGCGG GCCTGGTGGG CGGCCTGGGC ATGGCGCCCG GTGCCAACAT CGGCGCCGAT
GCGGCGATCT TCGAGGCCGT GCACGGCTCG GCGCCCGACA TCGCCGGCAA GGGCATCGCC
AACCCCACGG CACTGCTGCT GGCCGCCGCG CTGATGCTCG AGCACGTCAG GCTGCCCGAT
CTGGCCACGC GCCTGCGCAA GGCCATCGAC GACACGCTCA ACATCGACAA GGTGCGCACC
GGCGACCTGG GCGGCAGCGC CGGCACGGCG GCGTTCACCA AGGCGCTGGT CGCCCGCATC
CAGAACGGCT GA
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| Protein sequence | MTTPIPATLI PGDGIGPEIV DATLAALDAL KAPFEWDRQI AGLGGVQASG DPLPQATLDS
IRRTRLALKG PLETPSGGGY RSSNVRLREE FQLYANLRPA RTIIPGGRFD KIDLMVVREN
LEGLYIGHEH YVRIDGDPHA VGMATGINTR QGCLRLLEYA FETAIAAGRK KVTLVHKANI
MKVLTGLFLE TGLRLYEEKY KGRFELDTII VDACAMKLVL NPWQFDMLVT TNLFGDILSD
LVAGLVGGLG MAPGANIGAD AAIFEAVHGS APDIAGKGIA NPTALLLAAA LMLEHVRLPD
LATRLRKAID DTLNIDKVRT GDLGGSAGTA AFTKALVARI QNG
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