| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4073 |
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| Symbol | |
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| ID | 7974395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4316732 |
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| End bp | 4318570 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794659 |
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| Product | Respiratory-chain NADH dehydrogenase domain 51 kDa subunit |
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| Protein accession | YP_002945952 |
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| Protein GI | 239817042 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACAACC ACCCAGCCAC GACCCGCGAG ACAACAACAA CAAAGGCAGC AGCCAGCACG
CACACCATCG TGCCGCTCGC CACCGCCGAC GAAATGCGCG AGCGCATCCG CCGCAAGAGC
AAGCTCAAGG GCCGCCAGCC CGACGAAGCG GCGCTCGTCG AAGTGCGCAC GCTGATCGGC
GCGCGTCCGG CCGAGGGCCA CCGGCGCGAC CTGCTCATCG AGCACCTGCA CAAGCTCAAC
GACGCCTTCC GCTGCCTGCA CGACCGCCAC CTGGTGGCGC TGGCGCGGGA AATGAACATC
CCGATGGCCG AGGTCTACGA GGTCGCGACC TTCTATCACC ACTTCGAGGT GGTGCGCGGC
GACGAGGCCG CGCCGGGCCT CACGGTGCGC GTGTGCGACG GCCTGGCCTG CGAACTGGCC
GGTGCCAGGG ACCTGCTGGC GCGGCTGCCC GAACTGCTCG GCGTCGAGGG TGGCGACGTG
CGCGTGATTG CGGCGCCCTG CATCGGCCGC TGCGAGCAGG CGCCCGCGGT GGCTGTCGAC
CGGCAGGCCG TGCCGCTCGC GACCACGGCG AAGGTGCTGC AGGCGCTGAA GTCCGATCCT
GAGGAAGCCA CGGTCGCGTA CTTCGACGCG GCCGCGTTCG CCGAGAAAAG CATCTCGCCG
CTCCCCGGCG CCATCGAGCG CATGCCGGCC TTCACCGACT ACGCCACCTA CCGCGCGCAC
GGCGGCTACG CGCTCGCATC CGCGCTCGTC AACGGCGAGG AAGACGCCGA AGCCATCATC
AAGACCATGG AAGACTCGGG CCTGCGGGGC CTGGGAGGTG CGGGCTTTCC GGCCGGGCGC
AAGTGGCGCA TCGTGCGCGA CCAGCCGGCG CCCCGGCTCA TGGCGGTCAA CATCGACGAA
GGCGAGCCCG GCACCTTCAA GGACCGCACC TACCTCGAAC GCGATCCGCA CCGCTTCCTC
GAAGGCCTGG TGGTGGCGGC GCAGATCGTC GGCATCGAGC AGTGCTACAT CTACCTGCGC
GACGAATACC ACGATTGCCG CGCGCTGCTC GAAACCGAGC TGGCGCGGCT GCAGGCCGAT
CCGCCCTGCG CGCTGCCGCG CATCGAGCTG CGGCGCGGCG CGGGCGCCTA CATCTGCGGC
GAAGAGTCGG CCATGATCGA AAGCATCGAG GGCAAGCGCG GCGAACCGCG CATGCGCCCG
CCCTACATCG CGCAGGTGGG CCTGTTCGGC CGCCCGACGC TGGAGCACAA CTTCGAAACC
CTCTACTGGG TGCGCGACAT CGTCGAGAAA GGCGCGGCCT GGTTCAGCGG CTTCGGCCGC
CACGGCCGCA AGGGCCTGCG CAGCTTCAGC GTGAGTGGCC GCGTGAAGCA CCCGGGCGTC
AAGCTCGCGC CCGCGGGCAT CACGGTGCAG GAACTCATCG ACGAATACTG CGGCGGCATG
CTCGATGGCC ACTCGCTCTA CGCCTACCTG CCGGGCGGTG CATCGGGCGG CATCCTGCCG
GCGCGCATGA ACGACATTCC GCTCGACTTC GACACGCTGC AGCCCTACGG CTGCTTCATC
GGCTCGGCCG CGGTGATGGT GCTGAGCCAG CACGACCGCG CCCGCGACGC CGCGCTCAAC
GTGATGCGCT TCTTCGAGCA CGAAAGCTGC GGCCAGTGCA CGCCCTGCCG CGTCGGCACC
GCCAAGGCCG CGGCGCTGAT GCATGCGCCG GTGTGGGACA ACGCCACGCT CGAAGACCTC
GCGCAGGTCA TGGGCGACGC CTCCATCTGC GGACTCGGAC AGGCGGCCCC CAACCCGATC
CGCTGCATCC AGCAATACTT CCCGGAGGAA ATCGCATGA
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| Protein sequence | MNNHPATTRE TTTTKAAAST HTIVPLATAD EMRERIRRKS KLKGRQPDEA ALVEVRTLIG
ARPAEGHRRD LLIEHLHKLN DAFRCLHDRH LVALAREMNI PMAEVYEVAT FYHHFEVVRG
DEAAPGLTVR VCDGLACELA GARDLLARLP ELLGVEGGDV RVIAAPCIGR CEQAPAVAVD
RQAVPLATTA KVLQALKSDP EEATVAYFDA AAFAEKSISP LPGAIERMPA FTDYATYRAH
GGYALASALV NGEEDAEAII KTMEDSGLRG LGGAGFPAGR KWRIVRDQPA PRLMAVNIDE
GEPGTFKDRT YLERDPHRFL EGLVVAAQIV GIEQCYIYLR DEYHDCRALL ETELARLQAD
PPCALPRIEL RRGAGAYICG EESAMIESIE GKRGEPRMRP PYIAQVGLFG RPTLEHNFET
LYWVRDIVEK GAAWFSGFGR HGRKGLRSFS VSGRVKHPGV KLAPAGITVQ ELIDEYCGGM
LDGHSLYAYL PGGASGGILP ARMNDIPLDF DTLQPYGCFI GSAAVMVLSQ HDRARDAALN
VMRFFEHESC GQCTPCRVGT AKAAALMHAP VWDNATLEDL AQVMGDASIC GLGQAAPNPI
RCIQQYFPEE IA
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