| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4045 |
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| Symbol | |
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| ID | 7974611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4286584 |
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| End bp | 4287924 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794632 |
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| Product | General substrate transporter |
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| Protein accession | YP_002945925 |
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| Protein GI | 239817015 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.849183 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACGA CGTCCAGCAT CAGTCCGCAA GGCGCACAGC CTGTGCCGAA CACGTCCGAA
AACGCCGCCC GGCAGGGCGA CGAACATTCA CACATCGCAC CCGGCGAAAT CGCCGTGGGC
GTGATCATCG GCCGCGCGTC GGAATATTTC GATTTCTTCG TCTACGGCAT TGCCTCGGTG
CTGGTGTTCC CGGCGGTGTT CTTTCCGTTC GAGGCGCGCC TGGAGGGAAC CCTCTACGCC
TTCGTGGTTT TTTCGTTCGC ATTCCTCGCA CGGCCGTTCG GAACCGTCAT TTCGATGGCC
ATCCAGCGGC GCTTCGGGCG GGAAGCCAAG CTGACCATTG CGCTGTTCGT GCTGGGCACC
TCGACCGCCG GCATCGCCTT TTTGCCGGGC TACGCGAGCC TCGGCTTCAC GTCGATCGTG
CTGCTGTCGG TGTTCCGCTT CGCCCAGGGA CTGGCGCTCG GCGGCTCATG GGACGGCCTG
CCCTCGCTGC TGGCGCTCAA TGCGCCCGAG AACCGCCGCG GCTGGTACGC CATGCTGGGC
CAGCTGGGTG CGCCGCTCGG CTTTTTCGTG GCCAGCGCGC TGTTCGCCTA CCTCTACGCC
AACCTGCCGC TCAAGGACTT CCTCGACTGG GGCTGGCGCT ACACCTTCTA CGTGGCCTTC
GCGATCAACG TGGTGGCGCT GTTCGCGCGC CTGCGGCTGG TGGCCACCGA AGAGTATTCC
CGCCTGCTCG AGGAGCGCGA GCTGCAGCCC ACCAGCGTGG TCGAGCTGGC CCGCTCGCAG
GGCGCCAACC TGCTGATCGG CGCGTTCGCG GCGCTGGCCA GCTATGCGCT GTTCCACCTG
ATCACGGTGT TCCCGCTGTC GTGGATCACG CTGTACTCCG ACCAGTCGAT CACCGAGTTC
CTGGTGGTGC AGATGATCGG CGCGGTGTTC TGCGCCGGCG GCATCGTGGC CTCGGGCGTG
GTTGCCGACC GCGTGGGACG GCGTTTCACG CTGGGCGGCC TGGCCGCGAT GATCGCGGTG
TTCAGCGGCT TTGCGCCCAC GCTGCTCGAC GGCGGCCGCC TCGGACAGGA CATCTTCATC
CTGCTGGGCT TCGTGCTGCT GGGTCTCTCG TACGGCCAGG CGGCCGGCGC CGTGACCTCG
AACTTCGAAC CCAAGTACCG CTACACCGGC GCCGCCCTCA CGGCCGACTT GGCCTGGCTC
ATCGGTGCCG CCTTCGCGCC GCTGGTGGCG CTGGGGCTGT CGGCGAATTT CGGGCTGGCC
TATGTGAGCG TGTACCTGCT GTCGGGCGCG GTCGGCACGC TGGCGGCGCT GGGACTCAAC
CGGGCGCTGG TGCGCGACTG A
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| Protein sequence | MTTTSSISPQ GAQPVPNTSE NAARQGDEHS HIAPGEIAVG VIIGRASEYF DFFVYGIASV
LVFPAVFFPF EARLEGTLYA FVVFSFAFLA RPFGTVISMA IQRRFGREAK LTIALFVLGT
STAGIAFLPG YASLGFTSIV LLSVFRFAQG LALGGSWDGL PSLLALNAPE NRRGWYAMLG
QLGAPLGFFV ASALFAYLYA NLPLKDFLDW GWRYTFYVAF AINVVALFAR LRLVATEEYS
RLLEERELQP TSVVELARSQ GANLLIGAFA ALASYALFHL ITVFPLSWIT LYSDQSITEF
LVVQMIGAVF CAGGIVASGV VADRVGRRFT LGGLAAMIAV FSGFAPTLLD GGRLGQDIFI
LLGFVLLGLS YGQAAGAVTS NFEPKYRYTG AALTADLAWL IGAAFAPLVA LGLSANFGLA
YVSVYLLSGA VGTLAALGLN RALVRD
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