| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4040 |
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| Symbol | |
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| ID | 7974606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4283058 |
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| End bp | 4283780 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794627 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002945920 |
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| Protein GI | 239817010 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGAGA TCATCCACGA CTACTGGGTC TACTTCCTCA TCGGGCAGTA CCCGAACGGG
CCGCTCGGCG GACTCGTGCT CACGCTGCTG CTCGCCTCCT GCGGCCTGGT GCTCGCGCTG
CCGCTGGGCA TCGTGCTCGG CCTGGCGCGC GTGAGCCCGT GGCGCTGGCT GCGCTGGCCG
GTCACGGGCT TCGTCTTCGT GGTGCGCGGC CTTCCCTTGC TGATGGTGAT CTTCTGGGCC
TATTTCTTCC TGCCGAGCGT CACGGGCGTG AAGACCGACC AGTTCACCAC CATGCTGATC
GCGCTGGTGG TGTTCGATGC GGCCTACCTG GCCGAGATCG TGCGCGCCGG CATCCAGGGC
CTGCCGCGCG GCCAGATGGA AACCGCCCGC GCGCTGGGCC TGGACTATGG CCGCGCGATG
CGCCTGGTGG TGCTGCCGCA GGCGCTGCGC AGCATGCTGC CCTCGCTGGT GAACCAGTTC
GTCTCGACCA TCAAGGAGAC CTCGCTCGGC TACATCATCG GGCTGGCCGA GGTGTCGTTC
ATCGCGACGC AGATCAACAC GCAGGTGTTC ACCAAGCCCG CGCAGATCTA CCTGATCCTG
GGCCTGACCT ATTTCATCCT GTGCTTCGGC CTGTCACGCT TCGCCTACTG GCTCGAACGC
CGGCTCGCGC GGCGCGGCAT GTCCACCGCC AGCGCCGTCT CGGCTCCCAA GGTATCCGCA
TGA
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| Protein sequence | MLEIIHDYWV YFLIGQYPNG PLGGLVLTLL LASCGLVLAL PLGIVLGLAR VSPWRWLRWP
VTGFVFVVRG LPLLMVIFWA YFFLPSVTGV KTDQFTTMLI ALVVFDAAYL AEIVRAGIQG
LPRGQMETAR ALGLDYGRAM RLVVLPQALR SMLPSLVNQF VSTIKETSLG YIIGLAEVSF
IATQINTQVF TKPAQIYLIL GLTYFILCFG LSRFAYWLER RLARRGMSTA SAVSAPKVSA
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