| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4011 |
|---|
| Symbol | |
|---|
| ID | 7974576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4254755 |
|---|
| End bp | 4256302 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794597 |
|---|
| Product | urea ABC transporter, permease protein UrtB |
|---|
| Protein accession | YP_002945891 |
|---|
| Protein GI | 239816981 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.430688 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTTCA TGGCAACGGC CGTCCACGCG CTGACCGCCG ACGAAGCCCG CGCCATCGCC
TCGGGCGAAT CCGAGGCGCG CATCAGCGCG CTCAACAAGG CCGTGCTCAC GGCCGACGAC
AAGACCGCCG CGTTCATCCA GGCGATGTCC GAGGATGCGG TCAAGTACAC CGAAGACAAG
GTCTTCGTGA TGAAGGACGA CAAAGGCTAC GACCCCGTGA CCGGTGCCGA GCTGAAGGTG
CCCGACACGG CCGAGGACGT GGTCAACAAC AACCTCATGC GCGGCGCGCT CGATGCCGCG
CAGGCCGCGC TCAAGCTCAC GAGCAAGGAC GACGCGGTGC GCGCCGAAGC CGCGCAGGCG
CTCTTCAAGG AGCCCGACGA ATCGCGCGTG CCGATGGTCG AGAAGGCGCT GGCCGCCGAG
ACCAACCCCG GCATCAAGGC GCAGCTGCAG CTGGTGCGCG CCGCCAGCAT GCTCACCAGC
GCCGACAAGG CCAGGCGCCT TGCCGCGGCC AAGGAGCTCG GCGCCAACAC CAGCCCCGAC
ACCAAGCTGC TGCTCAACCA GCGCCTGGCC GACGAGACCG AGGCCGACGT CAAGGCCGCC
ATCGTCGCCT CCATCGCGAG CATCGACGGC TCGCTGGTCT GGGGCGACCG CATCAACGCG
GTGTTCAGCG GCATCAGCCT GGGCTCGGTG CTGCTGCTGG CCGCGCTGGG CCTGGCCATC
ACCTACGGCC TGATGGGCGT CATCAACATG GCGCACGGCG AGCTGATGAT GATCGGCGCC
TACGCCACCT ACGTGATGCA GGGCATCTTC CAGCGCTACA TGCCCGAGGC GGCTTTCGGC
TGGTACCTGG TGGCGGCCAT TCCGGTGGCC TTCCTGAGTT CCGCGCTGGT GGGCGCGGTG
CTCGAGCGCG GCGTGATCCG CTTCCTCTAC GGCCGGCCGC TCGAGACGCT GCTGGCCACC
TGGGGCATCA GCCTGATGCT GCAGCAGCTC GTGCGCTCGC TGTTCGGCGC GCAGAACGTG
GGCGTGGAAA ATCCCGGCTG GATGAGCGGC GGCTTCACCA TGCTGAGCAA CGTCACGCTG
CCGTGGAACC GCATCTGCAT CATCGTCTTT GCGGTGCTGG TGCTGCTTGC GATGGGCTGG
CTCATCGGCC GCACGCGGCT GGGCCTGTTC GTGCGCGGCG TCACGCAGAA CCGGCCGATC
GCATCGTGCA TGGGCGTGAA CACCGCGCGC ATCGACACCT ACGCCTTCGC GCTCGGCTCC
GGCATTGCGG GCCTCGCGGG CTGCGCGCTG AGCCAGATCG GCAACGTCGG GCCGGACCTC
GGCCAAAGCT ACATCGTGGA CAGCTTCATG GTGGTCGTGA TGGGCGGTGT GGGCCAGCTC
GCGGGCACGG TGTATGCGGC CATGGGCCTG GGCATTCTCA ACAAGTTCAT CGAAGGCTGG
GCGGGCGCGG TGCTCGCGAA GATCGCGGTG CTTGTTTTCA TCATCATCTT CATTCAAAAG
AGACCTCAAG GCATCTTCGC CATGAAGGGC CGGAGCGCAG AAGCATGA
|
|---|
| Protein sequence | MLFMATAVHA LTADEARAIA SGESEARISA LNKAVLTADD KTAAFIQAMS EDAVKYTEDK
VFVMKDDKGY DPVTGAELKV PDTAEDVVNN NLMRGALDAA QAALKLTSKD DAVRAEAAQA
LFKEPDESRV PMVEKALAAE TNPGIKAQLQ LVRAASMLTS ADKARRLAAA KELGANTSPD
TKLLLNQRLA DETEADVKAA IVASIASIDG SLVWGDRINA VFSGISLGSV LLLAALGLAI
TYGLMGVINM AHGELMMIGA YATYVMQGIF QRYMPEAAFG WYLVAAIPVA FLSSALVGAV
LERGVIRFLY GRPLETLLAT WGISLMLQQL VRSLFGAQNV GVENPGWMSG GFTMLSNVTL
PWNRICIIVF AVLVLLAMGW LIGRTRLGLF VRGVTQNRPI ASCMGVNTAR IDTYAFALGS
GIAGLAGCAL SQIGNVGPDL GQSYIVDSFM VVVMGGVGQL AGTVYAAMGL GILNKFIEGW
AGAVLAKIAV LVFIIIFIQK RPQGIFAMKG RSAEA
|
|---|
| |