| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4004 |
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| Symbol | |
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| ID | 7974569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4247287 |
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| End bp | 4248540 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794590 |
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| Product | 40-residue YVTN family beta-propeller repeat protein |
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| Protein accession | YP_002945884 |
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| Protein GI | 239816974 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3391] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.540358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGCCA TTCCCGGGTT TGTGCGCATC CTCGTCGTTC TCGCGGCGCT GGGCGCTTCG
GCCTTCTGCG CCTTCGCAGC CGGCCCCAAG ACCTACGTCG GCAATTTCAA GGACAGCACG
GTCAGCGTGA TCGACACCGG CACCGAGCGC GTGCTCGCCA CCGTGCCGGT GGCCACGGGG
CCGGACGGCA TCGTCATCTC ACCGGATGGG CGCAGCGTGT TCGTCAGCGG CTCCGGCGCC
TCGGCGGTGA GCGAGATCGA CGCAGCCAGC GACGGCGTGG CGCGCACCAT CGAGGTCGGC
AAGGGCCCGC AGGGCCTCGC CGCCACGGCC GACGGACGCT GGCTGCTGGT GGCCGTCAAC
GGCGACGACC GCGTGGCCTT CATCGACACC GCGACGCACG CCGTCGGCGC CACCGTGCCC
GTGCCCAAGC CGCACACCAT CGCCGTGCGG CCCGACGGCC GGCAGGCCTA CGTCGCCTCG
CAGGAGCCGG GGCACTTTGC GCTGGTGGTC GTCGACCTGG CGGCGCGCAC GGTGGTCACG
GAGATCCCGC TCGAGAAGGC GCCGCGCGAC CTGGAGTTCG GCCACGACGG CAAGGCGCTG
TACCTGACCC TGGCGGGCGT GCCCGCCGTG CAGGTGCTGG ACCCGGCGAC GGACCAGTGG
CTGGCGCCAA TACCGACCGG CGTGTCGCCC CACATCGCCC AGCACTTCGC CGGCATGGCG
AGCGGCGTGG TGGTCGTGCA GGGGCCGGGC GAGGTCTTGC TCTTCGACCC GGCGACGCGG
GCGCCGGGCC GCAGCATCGC CGTGGGCAAG CAGCCGCACT GGCTCGACCT GTCGGCCGAC
GGCAAGAAGC TGTGGGTGAG CAACGAAGGC TCCAACGACG TCAGCGTGGT CGACCTCGCA
GGCGGCCCGA TGCACACCGT GCCGGTCGGC ATTGCGCCGC GCAAGGTGGC CGTGCAGCGC
GCCGCGTCCG CAGGCGCCGC GCCTGCGGCG CAGGCCGGCG GTTCCGCGCA GGTGGCGATC
CGCAACTTCG CCTTCGAGCC GGCGCAGATC ACCGTCAAGG CGGGCCAGAG CGTGACCTGG
AAGAACGACG ACGGCGCGCC GCACGGCATC GTCTTCAAGG ACGGCACTGC GGGCATGGAC
CTCATGCTGC CCGGCAAGAC CTTCACGCAG ACTTTCGACA AGCCGGGCGT GCACGACTAC
GCCTGCTCAG TGCATTCCTA CATGACGGCG CGCGTGACGG TGCTCGCACC CTGA
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| Protein sequence | MIAIPGFVRI LVVLAALGAS AFCAFAAGPK TYVGNFKDST VSVIDTGTER VLATVPVATG
PDGIVISPDG RSVFVSGSGA SAVSEIDAAS DGVARTIEVG KGPQGLAATA DGRWLLVAVN
GDDRVAFIDT ATHAVGATVP VPKPHTIAVR PDGRQAYVAS QEPGHFALVV VDLAARTVVT
EIPLEKAPRD LEFGHDGKAL YLTLAGVPAV QVLDPATDQW LAPIPTGVSP HIAQHFAGMA
SGVVVVQGPG EVLLFDPATR APGRSIAVGK QPHWLDLSAD GKKLWVSNEG SNDVSVVDLA
GGPMHTVPVG IAPRKVAVQR AASAGAAPAA QAGGSAQVAI RNFAFEPAQI TVKAGQSVTW
KNDDGAPHGI VFKDGTAGMD LMLPGKTFTQ TFDKPGVHDY ACSVHSYMTA RVTVLAP
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