| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4003 |
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| Symbol | |
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| ID | 7974568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4246319 |
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| End bp | 4247278 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794589 |
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| Product | transcriptional regulator, DeoR family |
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| Protein accession | YP_002945883 |
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| Protein GI | 239816973 |
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| COG category | [K] Transcription |
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| COG ID | [COG2390] Transcriptional regulator, contains sigma factor-related N-terminal domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.296305 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAGG AAGATCAGGT GGCGGTGCGC GTGGCCTGGC TCTACTACAT GGAGGGCCTG
ACGCAGGACG GCATCGCCAC GAAGCTCGGC CTCACGCGGC TGCGCGTGAA CCGCCTGCTG
GGCGAGGCGC GCGAGAGCGG GCTGGTCAGC ATCAAGATCA ACTCGCGCCA CGAGAGCTGC
CTGCGGCTGG AAGAAGAGCT GCGCAGCGTC TGCGGCCTGC GCGAGGCAAC GATCATTCCC
ACGCCCGAGA GCCCCGAACT CATCCCCGTG CTGCTGGGGC GAACGGCCGG CGAATACCTG
TCGAAGCACA TCGAGACGAA CCGCGTGCGC GGCGTGGGCG TGGGCTGGGG CGCCACCTTG
CGCGAGGCCA TACGCCACGT CGCACCGGGC CAATGGCCCG AGGTGCACGT CAACTCGATG
ATGGGCGGCC TGACGCGCGG CCTGGAGATC AACACCTTCG AGACGGCCAG CGCACTGGCC
GCGCGGCTGG GCGCGCAGTG CAGCTACCTG GCCGCGCCCC TGTATGCGGG CAGCGCCAGG
TCGCGCGACA CCATCGTCTC GCAGGATGTC TTCAAGGAAG CCTTCGGCCA GATCGCGGCC
AACGACGTCG CGCTGCTGAG CGTGGGCGAC CTGAGCACGC GCTCGCTGCT GGTGCGCTAC
GGCCTGCCGA AGGACGTGCC GGTGGCCGAG CTGCGCCAGG CCAAGGCGGT GGGCGACATC
ATCGGCCAGT TCCTCGACCG CCACGGCAAC CCGGTGAAGC ATGCGCTGAA CCAGCGCGTG
GTCGCGCCCT CACTCGAGGA GCTGGCGCGC ATTCCGACGG TGATCGTCGC CTCGGGCGGC
GAGAACAAGG CGCCGATCAT TGCGGCGGTG CTGCGGGCCA GGCTGCTGTC GGTGCTGATC
TGCGACGAGC AGACGGCGCG CACGGCGCTG AAGCTCTACC AGGCGCTGGG GGAGCGCTGA
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| Protein sequence | MAEEDQVAVR VAWLYYMEGL TQDGIATKLG LTRLRVNRLL GEARESGLVS IKINSRHESC
LRLEEELRSV CGLREATIIP TPESPELIPV LLGRTAGEYL SKHIETNRVR GVGVGWGATL
REAIRHVAPG QWPEVHVNSM MGGLTRGLEI NTFETASALA ARLGAQCSYL AAPLYAGSAR
SRDTIVSQDV FKEAFGQIAA NDVALLSVGD LSTRSLLVRY GLPKDVPVAE LRQAKAVGDI
IGQFLDRHGN PVKHALNQRV VAPSLEELAR IPTVIVASGG ENKAPIIAAV LRARLLSVLI
CDEQTARTAL KLYQALGER
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