| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3976 |
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| Symbol | |
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| ID | 7974541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4219632 |
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| End bp | 4220834 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794562 |
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| Product | cystathionine beta-lyase |
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| Protein accession | YP_002945856 |
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| Protein GI | 239816946 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.758953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGATT CGCCCAAAGA CACCGCAGGC CACGCTCTCG ACACCCGGCT CGCCCATACC
GGAAAGGCCC CGGCCTACTT CGGCGGCTCG CCGGTCAACA CGCCGCTGGT GCGCGCGAGC
ACCGTGCTGT TCGACAGCGT GGCCGCCATG CGCGAGACGC GCGCGCGGCG CGGCGAAGAG
CGCGCCTTCA GCTACGGCGC ACGCGGCACG CCCACCACCT TCGCGCTCGA AGACGCGGTG
AGCGAACTCG AAGGCGCCCA CCGCACGCGC CTCTTTCCCA CCGGCCTTGC CGCCATCGGC
ATGGTGCTGC TGTCGTACCT GAAGCCCGGC GACCATGTGC TGATGTCGGA CAGCGTGTAC
GAGCCGGCGC GCAAGCTCGT GCACTCCTTC CTCGATCCCT ACGGCATCCG CTGCACCTTC
TTTGCCGCGG ACGGCAGCGG TGTGGAGGAA CTGTTCGAGC CGAACACCAA GCTCGTGTAT
GCCGAATGCC CGGGCTCGCT GGTCTACGAG ATGTGCGACC TGCCCCGGCT CGCCGAGCTG
GCCCATGCGC GCGGCGCGCT CGTTGCCGCG GACAACACCT GGGGCTCGGG CGTTCAATAC
CGGCCGCTTG CACTGGGCGC CGACATCTCG CTGATGGCCG CCACCAAGTA CCTCTCGGGC
CACTCCGACG TGATGATGGG CACCGTGGCC ACCACGCGCG AAGCCTGGCA GCCGCTCAAC
GAGCGCTGCG ACGCCTTCGG CATGACGGTG AGCCCGGACG ATGCCTGGCT GGTGCTGCGC
GGCATGCGCA CGCTGTCCGC GCGGCTGCAG ATGCACGAGC GGCATGCAAT GGAAGTGGCG
TACTGGCTGC AGGCGCGGCC CGAAGTGGCG GCGGTGTTCT GCCCCGCGCT GCCGCAGCAC
GCGGGCCACG CGCTCTGGAA GCGCGACTGC CGCGGCACCA ACGGGCTGGT CTCGTTCGAG
CTGCAGCCGG GCACCGAGAA CGCCGCGGTC GAGCGCTTCG TCGATGCGCT GTCGCTGTTC
GGCCGGGGCT CGTCCTGGGG CGGCTATGAA AGCCTGGTGG CTTGGGCCGA CATGCGCGCG
GCGCGCAGCG TGACCGACTG GAGCACGCGC GGCGCGGTCG TGCGGCTGCA CGTGGGGCTC
GAGTCGCCTT CGGACCTGCT GCGCGATCTT GAATGCGGCT TTGCGGCGCT GGGTGCCGGC
TGA
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| Protein sequence | MSDSPKDTAG HALDTRLAHT GKAPAYFGGS PVNTPLVRAS TVLFDSVAAM RETRARRGEE
RAFSYGARGT PTTFALEDAV SELEGAHRTR LFPTGLAAIG MVLLSYLKPG DHVLMSDSVY
EPARKLVHSF LDPYGIRCTF FAADGSGVEE LFEPNTKLVY AECPGSLVYE MCDLPRLAEL
AHARGALVAA DNTWGSGVQY RPLALGADIS LMAATKYLSG HSDVMMGTVA TTREAWQPLN
ERCDAFGMTV SPDDAWLVLR GMRTLSARLQ MHERHAMEVA YWLQARPEVA AVFCPALPQH
AGHALWKRDC RGTNGLVSFE LQPGTENAAV ERFVDALSLF GRGSSWGGYE SLVAWADMRA
ARSVTDWSTR GAVVRLHVGL ESPSDLLRDL ECGFAALGAG
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