| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3954 |
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| Symbol | |
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| ID | 7970383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4196848 |
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| End bp | 4198641 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794540 |
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| Product | glyoxylate carboligase |
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| Protein accession | YP_002945834 |
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| Protein GI | 239816924 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3960] Glyoxylate carboligase |
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| TIGRFAM ID | [TIGR01504] glyoxylate carboligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.416682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAA TGAAAGCGGT CCAGGCCGCC GTGCTGGTGA TGGAAAAGGA AGGCGTGACG
CAGGCCTTCG GCGTGCCCGG CGCGGCCATC AATCCGATGT ATTCCGCGCT GCGCCAGCGC
GGCACCATCT CGCACATCCT CGCGCGCCAC GTCGAAGGCG CCTCGCACAT GGCCGAGGGC
TACACGCGTG CCGTGGCCGG CAACATCGGC GTGTGCATCG GCACCTCGGG CCCCGCGGGC
ACCGACATGA TCACGGGCCT GTACTCGGCC TGGGCCGATT CGATTCCCAT TCTCTGCATC
ACCGGCCAGG CGCCGCGCGC GCGGCTCTAC AAGGAAGACT TCCAGGCGGT GGACATCGAG
TCGATCTCCA AGCCGGTCAC CAAGTGGTCG GTCACGGTGC GCGAGCCCGG CCAGGTGCCG
CAGGTGTTCC AGCAGGCCTT CCACCTGATG CGCTCGGGCC GCCCGGGCCC GGTGCTGGTC
GACCTGCCCT TCGACGTGCA GATGGCCGAG ATCGAGTTCG ACATCGACGC CTACCAGCCG
CTCACCCCCT ACAAGCCCGC CGCCACGCGC GCCCAGATCG AGAAGGCCAT CGGCATGCTC
CAGGCCGCCG AGCGCCCGCT GATCGTAGCC GGCGGCGGCA TCATCAACGC CGATGCGGCC
GACCTGCTGG TGCGCTTTGC CGAGACCACC GGCGTGCCGG TGATTCCCAC GCTGATGGGC
TGGGGCGCAA TCCCTGACGA CCATCCGCTG ATGGCCGGCA TGTGCGGCCT GCAGACCAGC
CACCGCTACG GCAACGCGAC GATGCTCGCG AGCGACTTCG TGCTGGGCAT CGGCAACCGT
TGGGCCAACC GGCACACGGG TTCGGTCGAC GTCTACACCA AGGGCCGCAC CTTCGTGCAC
GTGGACATCG AGCCCACGCA GATCGGCCGC GTGTTCACGC CCGACTTCGG CATCGTGTCC
GACGCCAAGG CCGCGCTCGA GCAGTTCGTG GCCGTGGCCG AGGAGATGAA GGCCGCCGGC
AAGCTGCGCG ACCGGCGCGA GTGGGCCAGG TCGTGCATCG AGCGCAAGAA GACCATGCTG
CGCAAGACCA ACTTCGACGA AGTGCCAATG AAGCCGCAGC GCGTGTACCA GTGCATGAAC
AACAACTTCA GCAACGACAC CTGCTACGTG AGCACCATCG GCCTCTCGCA GATCGCGGCC
GCGCAGTTCC TGCACGTGTA CAACCCGCGC CACTGGATCA ACTGCGGCCA GGCCGGCCCG
CTGGGCTGGA CCATTCCCGC CGCGCTGGGC GTGCGGGCGG CCGACCCTTC GCGCAAGATC
GTCGCGCTCT CGGGCGACTA CGACTTCCAG TTCATGATCG AGGAGCTCGC GGTGGGTGCG
CAGTTCAAGC TGCCGTACAT CCACATCGTG GTCAACAACT CCTACCTTGG CCTGATCCGC
CAGGCGCAGC GCGGCTTCGA GATGGACTAC TGCGTGCAGC TCGCGTTCGA CAACATCAAC
GCGGGGCCCG ATGCGGGCAT CGAAAGCAGC TACGGCGTGG ACCACCTGAA AGTGGTCGAG
GGCCTGGGCT GCAAGGCGAT CCGCGTGAAC CGGCAGGAAG AGATCGCGCC GGCCATCCAG
CGCGCCGAGG CGCTGATGGC CGAGTTCAGC GTGCCGGTCG TCATCGAGGT GATGCTGGAG
CGCGTGACCA ACATCGCGAT GGGCACCGAG ATCGACAACA TCACCGAGTT CGAGCCGCTG
GCCGAGCATC CGGCCGATGC GCCGACCGCC GTCGCGGCCG AGATGCTGGA CTGA
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| Protein sequence | MAKMKAVQAA VLVMEKEGVT QAFGVPGAAI NPMYSALRQR GTISHILARH VEGASHMAEG
YTRAVAGNIG VCIGTSGPAG TDMITGLYSA WADSIPILCI TGQAPRARLY KEDFQAVDIE
SISKPVTKWS VTVREPGQVP QVFQQAFHLM RSGRPGPVLV DLPFDVQMAE IEFDIDAYQP
LTPYKPAATR AQIEKAIGML QAAERPLIVA GGGIINADAA DLLVRFAETT GVPVIPTLMG
WGAIPDDHPL MAGMCGLQTS HRYGNATMLA SDFVLGIGNR WANRHTGSVD VYTKGRTFVH
VDIEPTQIGR VFTPDFGIVS DAKAALEQFV AVAEEMKAAG KLRDRREWAR SCIERKKTML
RKTNFDEVPM KPQRVYQCMN NNFSNDTCYV STIGLSQIAA AQFLHVYNPR HWINCGQAGP
LGWTIPAALG VRAADPSRKI VALSGDYDFQ FMIEELAVGA QFKLPYIHIV VNNSYLGLIR
QAQRGFEMDY CVQLAFDNIN AGPDAGIESS YGVDHLKVVE GLGCKAIRVN RQEEIAPAIQ
RAEALMAEFS VPVVIEVMLE RVTNIAMGTE IDNITEFEPL AEHPADAPTA VAAEMLD
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