Gene Vapar_3944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3944 
Symbol 
ID7970373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4185745 
End bp4186359 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content71% 
IMG OID644794530 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_002945824 
Protein GI239816914 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.508764 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCGTCC TTGCCAACCA CCTGTGCATC GTCGACGACG ACGAGGCCGT ACGCCGCTCG 
CTGGGCCTCC TGCTGCTGTC GCGCGGCCAT GCGGTGCAGG CCTTTGCCTC GGGCGAGGCC 
TTCCTGGCCG GCGCCGACCT GCAGCGTCCG GGCTGCGTCG TGCTGGACCT GCGCATGGAG 
GGCATGAGCG GGCTGCAGGT GTTCGATGCG CTGCGCGCGC AGGACAGTCC GCTGGTGGTG 
ATCTTCCTGT CCGGCCACGG CGACATCCCG ATGGCCGTGG AGGCGGTGCA GAACGGCGCC 
TTCGGCTGGC TCGAGAAGCC CTGCAACGAC GAGCGCCTGC TCGAGAGCAT TGCCAAGGCG 
CTGCAGAAGG CCGAAGAGAT CGCCCTGCGC CGGCAGGCCC GGCAGGCGGC CGAGGCCCTG 
TGGGCCAAGC TCACGCCGCG CGAGATGCAG GTGGCCCGGC TGGTCGCCCA GGGCCTGCCC 
AACAAGCGCA TTGCGCTGGA GCTCGCGCCG CTGGAGCAGC GCACGGTGGA AACGCACCGC 
GCCCACGTGT TCGCCAAGCT CGGCCTGTCG AACAGCCACG AGCTCGACCG CTTCCTGCGC 
GAGCACGGCC TGTAA
 
Protein sequence
MTVLANHLCI VDDDEAVRRS LGLLLLSRGH AVQAFASGEA FLAGADLQRP GCVVLDLRME 
GMSGLQVFDA LRAQDSPLVV IFLSGHGDIP MAVEAVQNGA FGWLEKPCND ERLLESIAKA 
LQKAEEIALR RQARQAAEAL WAKLTPREMQ VARLVAQGLP NKRIALELAP LEQRTVETHR 
AHVFAKLGLS NSHELDRFLR EHGL