Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3943 |
Symbol | |
ID | 7970372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4183568 |
End bp | 4185748 |
Gene Length | 2181 bp |
Protein Length | 726 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644794529 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_002945823 |
Protein GI | 239816913 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.388599 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTCCCC TGCCTTCCCT CCCACCCGAC ACGCCCACGG CTCGCCCGCA CCGCGGCCGC TGGCGCGCGC TGCTCGCGTG GACGGCCGCC GTGGCCGTCG CGCTGCTGCT GATCGGCGCG GCAGGCCAGT GGGCTGCGGC CCGCGAGGCG AGCTTCCAGG CAGACTCGAT CCGCCGCGCG ATGGAGGTCC ACGTGCTGGG CCTGCGCGAT GCCGCCGGCA AGTACGGCTA CCTGCCGCGC ACCGCGGGCA TGCACCCGGA CGTCTTCGAG GTGCTGGCCC ATCCGCGCGA CCCGGCGGCG CAGCAGCGCG CCAACCGCTA CATCGAAGAG GTGAACCGCC ACGCGGGCTC GGATGCGCTC TACCTGATCG ACCTGCAGGG CCTCACGCTG GCGGCAAGCA ACTGGGCCAC GCCGCAGAGC TTCGTCGGCG AGTCCTATGC CAACCGGCCC TACTTCATCG ACGCGCGCGC GGGCCGCAGC GGCCTCTTCT ACGGCGTGGG CCAGACCACC GGAGAACCGG GGCTCTTCAT GTCCGCGCCG GTACGCTCCG AGGCCGGCGC CGTGCTGGGC GTGCTGACGG TCAAGATCAG CCTGCGCCAG CTCCAGGAGG CCTGGACCTT CGCGCGCGAG CCGATCCTCT TGGCCGATGC GCGCGGCATC GTGTTCCTGA GCTCGGTGCC GGCCTGGATG TACCAGGCCA AGCGGCCGCT CGCCGCCGCC GACCTCGACC GCCTGAAGCA CGAGCAGCAG TACGGCGCCC GCACCGGCTT CCCGCCGCTG CCATGGACGG TGGCGCGCGA GAAAGGACAT CCGGGCTACC TCGTGCGCAC CGACATCGGC GGCCAGGCGC GCCGCTTCCT CGCGCTGGAC GAGCCGCTGC CCGACCTGGG CTGGACGCTG ACCGTGATGG CCGACCATTC GGAGGTCACC CGCGCGCGCG AGCGCACCTG GATGCTGGGC CTGCTGTGCG CGGGCGTGCT GCTGCTGGGC GGGCTCTACT GGCAGCTGCG CGAGCGCCGC TTTGCCGAGC AGCGCGACGC GCGGCGCGAC CTGGAGCTGC GGGTGCGCGA GCGCACGCAC GCGCTGGACG AGGCCCACGC CTTCCGCAAG GCGATGGAAG ACTCGCTGCT GGTGGGCATG CGCGCACGCG ACCTCGAAGG CCGCATCATC TATGTCAACC CCGCCTTCTG CGAGATGACC GGCTACGGCG CCGACGAACT GCTCGGCCGG CTGCCGCCCT ACCCCTACTG GCACCCCGAC GACGTGGCGC AGCACTGGCT GCATTACCAG GCGATGATGA GCGGGCAGCC TGCGCGCTCG GGCTTCGAGT CGCGGCTGCG GCACCGCGAT GGGCACGAGG TCATCACCAT GGTCTACACC GCGCCGCTGA TCGATGCCGA TGGCCGCCAC AGCGGCTGGA TGAGTTCGGT GGTCGACATC ACCGAGCAGA AGCGCGCCGA GCTGCGCCAG CGCCAGAACG ACGAGCAGCT GCAGCATGCG CAGCGCCTGG CCAGCCTGGG CGAGATGGCC TCCACGCTGG CGCACGAGCT GAACCAGCCG CTGATGGCGC TGAGCAATTT CGCGAGCGCG GCCAAGGCCT TCGCGGAACA GGGCAACCAG GCGCTGCTGG CCAGCAGCCT CGACGAGACC ATGGCGCAGG CCCGGCGCAG CGCCGAGATC GTGCGGCGCA TCCGCGGCTT CGTGCGCCAG CGCACCATCG GCACCGAGGA TTGCGCGGTG GCGTCGCTGG TCAGCAACGC GCTGGCGCTG CTGCAGGGCG AGATGCGGAT GCGCCAGGCG CGCGCCGAGG TGCGCCTGCG GCCAGACCTG CCCGAGGTGC GCGGCGACCG CGTGCTGCTG GAGCAGGTGC TGCTGAACCT GCTGTCCAAC AGCCTGCACG CCATGCAGGC CGCGCCGCCC GAGCAGCGGC TGGTGGAAAT CGACGCCGAG GTGAGCGAAG GCCGCATGCA CATCCACGTG GCCGACAGCG GGCCGGGCAT CGACGCGGCG CTGGCCGAGC AGGTGTTCGC GCCCTTCTTC ACCACCAAGA CCGGCGGGCT CGGGCTGGGC CTGAACATCT GCCGCACCAT CGTGGAGGCC CACCGCGGCC GGCTGTCCTT TGCCAACCGG GCCGGCGGTG GCACAGTTTT CACTCTCGAA CTGGAAATCT CACCGCCGTG A
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Protein sequence | MPPLPSLPPD TPTARPHRGR WRALLAWTAA VAVALLLIGA AGQWAAAREA SFQADSIRRA MEVHVLGLRD AAGKYGYLPR TAGMHPDVFE VLAHPRDPAA QQRANRYIEE VNRHAGSDAL YLIDLQGLTL AASNWATPQS FVGESYANRP YFIDARAGRS GLFYGVGQTT GEPGLFMSAP VRSEAGAVLG VLTVKISLRQ LQEAWTFARE PILLADARGI VFLSSVPAWM YQAKRPLAAA DLDRLKHEQQ YGARTGFPPL PWTVAREKGH PGYLVRTDIG GQARRFLALD EPLPDLGWTL TVMADHSEVT RARERTWMLG LLCAGVLLLG GLYWQLRERR FAEQRDARRD LELRVRERTH ALDEAHAFRK AMEDSLLVGM RARDLEGRII YVNPAFCEMT GYGADELLGR LPPYPYWHPD DVAQHWLHYQ AMMSGQPARS GFESRLRHRD GHEVITMVYT APLIDADGRH SGWMSSVVDI TEQKRAELRQ RQNDEQLQHA QRLASLGEMA STLAHELNQP LMALSNFASA AKAFAEQGNQ ALLASSLDET MAQARRSAEI VRRIRGFVRQ RTIGTEDCAV ASLVSNALAL LQGEMRMRQA RAEVRLRPDL PEVRGDRVLL EQVLLNLLSN SLHAMQAAPP EQRLVEIDAE VSEGRMHIHV ADSGPGIDAA LAEQVFAPFF TTKTGGLGLG LNICRTIVEA HRGRLSFANR AGGGTVFTLE LEISPP
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