| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3928 |
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| Symbol | |
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| ID | 7970357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4166799 |
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| End bp | 4168577 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794514 |
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| Product | putative bifunctional OHCU decarboxylase/allantoate amidohydrolase |
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| Protein accession | YP_002945808 |
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| Protein GI | 239816898 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3195] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01879] amidase, hydantoinase/carbamoylase family
[TIGR03164] OHCU decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.744958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTGA CCCTCGACCA ACTGAATGCC GCCGCGCCGG GCGATGCCGT GGCGCTGCTC
GACGGCACCT ACGAACATTC GCCGTGGATC GCCGAGCGCG CGCTCGCGGC GCGCCCGTTC
CGCTCGCTCG CGCACCTGAA GCATGCGCTC GTGCAGGCGG TGGCCGCGGC CTCGACCGAC
GAAAAGCTGG GCCTGATCCG TGCCCACCCC GAGCTCGCGG GCAAGGCCAT GGTCAGCAAG
ACGCTCACCG CCGAGTCGAC CCATGAGCAA GGCAAGGCCG GCCTCACCGA CTGCACGCCC
GAAGAGTTCG CGAAGATCCA GCAGCTCAAT GCCGACTACA ACGCGAAGTT CGGCTTCCCG
TTCATCCTGG CGGTGCGCGG GCCGCGCGGC ACCGGGCTTT CCAAGCGCGA GATCATCGAC
ACCTTCGAGC GCCGGCTGCA CCATCACCCG GACTTCGAGC TGGGCGAGGC GCTGCGCAAC
ATCCACCGCA TCGCCGAGAT CCGGCTCGAC GACAAGTTCG GCGCCGACGT CTCGCTCGGC
AACGACGTCT GGGATTGGCA CGAAGCGCTC TCGGCGCACA CCGACCCGGG CTACGCCGAG
AAAGGCCAGC TCACCGTCAC CTACCTGACC GATGCGCACC GCGCCTGCGC CGCGCAAATT
TCCGGCCTGA TGCGCGACTG CGGCTTCGAC TCGGTGCACA TCGATGCGGT CGGCAACGTG
GTCGGCCGCT ACGAAGGCAG CACGCCCAAT GCGAAGGCTT TGCTCACCGG CTCGCACTAC
GACACCGTGC GCAACGGCGG CAAGTACGAC GGCCGCCTGG GCATCTTCGT GGCCGTAGCC
TGCGTGCGCG AACTCAAGCG CCAGGGCCGG CGCCTGCCGT TCGCGTTCGA GGTGGTGGGC
TTTGCCGAAG AGGAAGGCCA GCGCTACAAG GCCACCTTCC TGGGATCGGG CGCGCTCATC
GGCCACTTCG ACCAGCGCTG GCTCGACCAG AAGGATGCCG ACGGCATCAC GATGCGCGAG
GCCATGCGGC ACGCGGGCCT GAAGGAAGAA GACATTCCCA AGATCCAGCG CGACCCGGCG
CGCTACCTCG GCTTCGTCGA GGTGCACATC GAGCAGGGGC CGGTGCTCAC CGAGCTCGAC
ATTCCCCTGG GCATCGTCAC CTCCATCAAC GGCGGCGTGC GTTACGTGGG CGAGATGATC
GGCATGGCCA GCCATGCCGG CACCACGCCG ATGGGCCGGC GCCGCGACGC CGCCGCCGCG
GTGGCCGAGC TGATCCTCTT CGCCGAGCAG CGCGCGGCAA AGGACGGCGA CTCCGTCGCG
ACCGTGGGCA TGCTCGAAGT GCCGAGCGGC TCGATCAACG TGGTGCCCGG GCGCTGCAAG
TTCAGCCTGG ACATCCGCGC GCCCAACGAT CCGCAGCGCG ACGCCGTGGT GCGCGACGTG
CTGGCCGCGC TGCAGGAGAT TGCCGACCGC CGCGGCGTGC GCTTCGTCAT TGAGGAGGCC
ATGCGCGCGG CCGCCGCGCC CAGCGCGCCC GCATGGCAGC AGCGCTGGGA AAAGGCGGTC
GAATCGCTCG GCGTGCCGCT CTTTCGCATG CCCAGTGGCG CCGGCCACGA CGCGATGAAG
CTGCACGAGG TGATGCCGCA GGCCATGCTC TTCGTGCGCG GCATCAACTC GGGCATCAGC
CACAACCCGC TCGAATCGAG CACCAACGAC GACATTCAAT TGGCTGTGCA GGCCTTCCAG
CACCTGCTGG ACAGCCTCGC CGCCGAACAA GCCCACTGA
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| Protein sequence | MSLTLDQLNA AAPGDAVALL DGTYEHSPWI AERALAARPF RSLAHLKHAL VQAVAAASTD
EKLGLIRAHP ELAGKAMVSK TLTAESTHEQ GKAGLTDCTP EEFAKIQQLN ADYNAKFGFP
FILAVRGPRG TGLSKREIID TFERRLHHHP DFELGEALRN IHRIAEIRLD DKFGADVSLG
NDVWDWHEAL SAHTDPGYAE KGQLTVTYLT DAHRACAAQI SGLMRDCGFD SVHIDAVGNV
VGRYEGSTPN AKALLTGSHY DTVRNGGKYD GRLGIFVAVA CVRELKRQGR RLPFAFEVVG
FAEEEGQRYK ATFLGSGALI GHFDQRWLDQ KDADGITMRE AMRHAGLKEE DIPKIQRDPA
RYLGFVEVHI EQGPVLTELD IPLGIVTSIN GGVRYVGEMI GMASHAGTTP MGRRRDAAAA
VAELILFAEQ RAAKDGDSVA TVGMLEVPSG SINVVPGRCK FSLDIRAPND PQRDAVVRDV
LAALQEIADR RGVRFVIEEA MRAAAAPSAP AWQQRWEKAV ESLGVPLFRM PSGAGHDAMK
LHEVMPQAML FVRGINSGIS HNPLESSTND DIQLAVQAFQ HLLDSLAAEQ AH
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