| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3901 |
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| Symbol | |
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| ID | 7970330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4133349 |
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| End bp | 4134269 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794487 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002945781 |
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| Protein GI | 239816871 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1079] Uncharacterized ABC-type transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.725338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAGCT ACGCACTCCT CCTAGGCTCG ACGCTGAGCG CCGGCACCGT GCTCGCCATC
GCGGCACTGG GCCTCCTGAT CAACGAGAAG GCCGGCATCG TCAACCTCGG CGCCGAGGGC
ATGATGCTCT GCGCCGCCAT CGCCGGCTTT GCGACGGTCG TCATCACCCA CAACCCCTGG
CTCGGCTTCC TGGCCGGCAT GGCGGCCGGT GCCCTGCTTG CCGCCTTCTT CGGCGTGCTG
GTGATCTGGC TCAACACCAA CCAGTACGCC ACCGGCCTCG CGCTCAGCCT TTTCGGCGTC
GGCTTCTCCG CCTTCGTGGG TATCAACTTC GTGCAGGCCA AGCTGCCCGA AAGCGTGTCG
TACGCGGTGC CGGTGCTCGG CGACATCCCG CTCGTCGGGC CCGCGCTTTT CCGCCACCAT
CCCATGGTGT ATTTCGCCGT GGTGCTGACC TTCGGCCTCA TCTGGTTTCT CTACCGCACC
CGCGCCGGGC TCGTGCTGCG CTCGGTGGGC GAGTCGCCCG AGTCGGCGCA TGCGCTCGGC
TATCCGGTGC GGCGCATCCG CTTCATGGCG GTGATCGCGG GTGGCGCGCT CTGTGGCCTG
GCGGGGGCGT ACCTGTCGAC CGTCTATACG CCGCTGTGGG TCGAGGGCAT GGTCGCGGGC
CGCGGCTGGA TCGCGCTGGC GCTCACCACC TTCGCCACCT GGCGGCCGAT CCGCGTGCTG
CTGGGTGCCT ACCTGTTCGG CGGCGTCTCG ATGCTCGGCT TCCACCTGCA GAGCAGCGGC
GTCGACGTGC CGCCGCAGTT TCTCAGCATG CTGCAGTACA TCGCGCCCAT CGTGGTGCTG
GCGCTGATCT CGCGCAACCC GGCCTTCATC CGCATCAACA TGCCCGCTTC GATCGGAAAA
CCGTTCTACC CCGGCTCATA A
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| Protein sequence | MDSYALLLGS TLSAGTVLAI AALGLLINEK AGIVNLGAEG MMLCAAIAGF ATVVITHNPW
LGFLAGMAAG ALLAAFFGVL VIWLNTNQYA TGLALSLFGV GFSAFVGINF VQAKLPESVS
YAVPVLGDIP LVGPALFRHH PMVYFAVVLT FGLIWFLYRT RAGLVLRSVG ESPESAHALG
YPVRRIRFMA VIAGGALCGL AGAYLSTVYT PLWVEGMVAG RGWIALALTT FATWRPIRVL
LGAYLFGGVS MLGFHLQSSG VDVPPQFLSM LQYIAPIVVL ALISRNPAFI RINMPASIGK
PFYPGS
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