| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3900 |
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| Symbol | |
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| ID | 7970329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4132127 |
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| End bp | 4133299 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794486 |
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| Product | basic membrane lipoprotein |
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| Protein accession | YP_002945780 |
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| Protein GI | 239816870 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.381277 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGATC TGAACAAGCG CTCCCTGCTC AAGCTGGCCG CCCTCACGGC GGTCGCTTCG
GCGGCCCTGA TCGGCTGCGG CAAGAAAGAG GAAGCGGCTG CACCGGCTGC AACCCCCGCG
CCGGCGCCGG CACCCGCTGC CGCCGCTCCG GCACCGGCAG CGCCGCTCAA CATCGCATTC
GCATACATCG GCCCGGTGGG CGACGGCGGC TGGACCTTCG CGCACGACAA CGGCCGCAAG
GCGCTCGAGA AGGAATTCGG CGACAAGATC AAGACCACCT TCGTCGAGAG CGTGCCCGAG
GGCGCCGACG CCGAGCGCGT GTTCCGCGAC ATGGTCGGCC AAGGCAACAA GCTGGTCTTC
GGCACCACCT TCGGCTACAT GGAGCCGATG CTCAAGGTGG CCGCCGACAG CAAGGACGTG
AAGTTCGAGC ATGCCACCGG CTACAAGACC GCCGAGAACA TGCGCACCTA CGACAGCCGC
ACCTACGAAG GCGCCTACAT GGCCGGCGTC ATTGCCGGCG CCATGACCAA GAGCAACACG
CTCGGCGTGG TCGGCTCGGT GCCGATTCCC GAGGTGCTGC GCAACATCAA CAGCTTCACG
CTGGGCGCGC AGTCGGTCAA CCCGAAGATC ACGACCAAGG TGGTGTGGGT GAACGAATGG
TTCAGCCCGC CCAAGGAAAC CGAAGCCGCC ACCGCCCTCA TCAACGGCGG CGCCGACGTG
CTGTTCCAGA ACACCGACTC GCCGGCCGTG CTCAAGACCG CGCAGGAAAA GGGCAAGCGC
GCCTTCGGCT GGGATTCCGA CATGACCGCC TACGGCCCCA AGGCCCACCT GGCCTCGGCC
ACCATCAATT GGGCGCCGTA CTACATCAAG GCCACGCAGG ACGCACTCGA CGGCAAGTGG
GCCACGGGCC AGGCCTGGTG GGGCGTGAAG GAAGGCGCCA TCGACCTCGT CTCGATCGCC
GAGGACGTGC CGGCCGAAAC CAAGGCCAAG GTCGAGGAAG TGAAGAAGGG CCTGAAGGAC
GGCAGCTTCG CGATCTGGAA GGGCCCGATC CTGGGCCAGG ACGGCAAGGA AGTGGTCGCC
AAGGATGCGG TGGCCGACGA CAAGTTCCTG TCGGGCGTGA ACTTCTACGT CAAGGGCGTG
GAAGGCAAGG TGCCGGGCGG GGACAAGAAG TAA
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| Protein sequence | MNDLNKRSLL KLAALTAVAS AALIGCGKKE EAAAPAATPA PAPAPAAAAP APAAPLNIAF
AYIGPVGDGG WTFAHDNGRK ALEKEFGDKI KTTFVESVPE GADAERVFRD MVGQGNKLVF
GTTFGYMEPM LKVAADSKDV KFEHATGYKT AENMRTYDSR TYEGAYMAGV IAGAMTKSNT
LGVVGSVPIP EVLRNINSFT LGAQSVNPKI TTKVVWVNEW FSPPKETEAA TALINGGADV
LFQNTDSPAV LKTAQEKGKR AFGWDSDMTA YGPKAHLASA TINWAPYYIK ATQDALDGKW
ATGQAWWGVK EGAIDLVSIA EDVPAETKAK VEEVKKGLKD GSFAIWKGPI LGQDGKEVVA
KDAVADDKFL SGVNFYVKGV EGKVPGGDKK
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