| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3889 |
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| Symbol | |
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| ID | 7970318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4120644 |
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| End bp | 4121546 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794475 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002945769 |
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| Protein GI | 239816859 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.246193 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCGA TCGAACTCAG CCGGATTGAC CTCAACCTGC TCACCGTGCT GGCGGCCCTC
ATGCGCGAGC GGCACGTCAG CCGGGCTGCG CAGCGGCTGC ACCTGGGACA GCCGGCCGTG
AGCCACGCGC TGGCGCGGCT GCGCGAGCTC ACGGGCGATC CGCTGCTGGT GCGCCAGGGG
CGGGTGATGG AGCCGACCGA ACGGGCACTG GCGCTGATGC AGGGACTGGG TCCGGCGCTC
GAGCAGATCG AGGCCACGTT CCGCGCGCAG GCGGATTTCG AGCCCGCGCG CGCCGCGCCG
GTGTTTCGCA TCGGGCTCAC CGACGACCTG CAGATCGCGA TGCTGCCGCG GCTGCTTCGC
GCGCTCAGCG TGGAAGCACC CCGCGCCAGG CTGGTGACCC TGACGGTCTG CTACCGCAAC
GCCGCGCGCT ATCTCGACGA AGGGCAGGTC AGCGCGGTCA TGACCTTCCT GAAGGATCTG
CCGGCGGGTG CCAAGATACG CAAGGTCCGC ACGGCACGCT TTGCGCTGCT GCGCGCCGAC
ACCGCGGCCG CAAGACTGAC GCTCGACGAC TATTGCCGGC GGCGGCACGT GCTCGTGACC
TACGCGGGCG ACCTGTGCGG CACCGTCGAC GAGACACTGA ACGAACTCGG CCGGCAGCGC
GAGGTGGCCT TCTCGGTGCC GCAGTTCGGC AGCCTGCCGG CCGTGCTCGC GGGCACCGAG
CTCCTGGCCA CGGTGCCGGA GCATGTGGCG CTGGCGCTGT CGGCGCAGGG CGGGCTTCGC
TGCGAGGCGC TGCCGTTCGA GAGTCCGAGC TACCAGATCA AGCTGGCCTG GCGCGCCGTG
ACCGACAAGG ACGCGGCGGA GACATGGCTG CGCAGGGCGA TGCTGCGGGC GTTCAACGAC
TGA
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| Protein sequence | MKPIELSRID LNLLTVLAAL MRERHVSRAA QRLHLGQPAV SHALARLREL TGDPLLVRQG
RVMEPTERAL ALMQGLGPAL EQIEATFRAQ ADFEPARAAP VFRIGLTDDL QIAMLPRLLR
ALSVEAPRAR LVTLTVCYRN AARYLDEGQV SAVMTFLKDL PAGAKIRKVR TARFALLRAD
TAAARLTLDD YCRRRHVLVT YAGDLCGTVD ETLNELGRQR EVAFSVPQFG SLPAVLAGTE
LLATVPEHVA LALSAQGGLR CEALPFESPS YQIKLAWRAV TDKDAAETWL RRAMLRAFND
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