| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3886 |
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| Symbol | |
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| ID | 7970315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4117843 |
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| End bp | 4119156 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644794472 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_002945766 |
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| Protein GI | 239816856 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2271] Sugar phosphate permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.214665 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCATT CGCCCTCCTC CCCTTCCTGT TCCCCGCGCC ACCGCTGGAA GGTGCTGGCC
GCCGGCGTGG CTGCCAACGC GGCGTTCTCC GTGGCCTTCA GCGGCATCCC GATGACCGCG
GTGCTGATGC GCACCGGCTA CCAGCTCGAC AACGCCACGC TCGGCCTCGT GCTCGGCCTC
ATGGGCCTGG GCATCGCGGT CAGTGAGCTG CCGTGGGGAC TGCTGACCGA CCGCTGGGGC
GACCGGCCGG TGCTGCTCAC GGGTCTTGGC AGCACCGCCA TCGCACTCGT GGCGATGGCG
CTCTGGGCCG CGCCCAGCGC GCAGCACATC CCGGGCCTCG GCTGGCTCGG CGCCGGCCTG
CTGCTGGTGG GCCTGCTGGG CGGCAGCGTC AACGGCGCGA GCGGCCGCGC GGTGATGACG
TGGTTCGACG CCGGCGAGCG CGGGCTTGCG ATGAGCATCC GCCAGACCGC GGTGCCGCTG
GGCGGCGGCA TCGGCGCGCT GGTGCTGCCG TTCGTCGCAT TGCACTTCGG CTTTGCCGCG
CTCTACGGCC TGCTGGCGGT GCTGTGCGCG CTGAGCGCAG CCATGAGCTG GGCCTGGGTG
CATGAGCCCC CTGTTGCGCC GGACGCGCCG CGCACCAGGG CCGATGTTGC CGAAGCCGCG
GCCATGCCGA AGAAGAGCGG CCCGCTGCGC GATGCCCGCG TCTGGTGCAT CGTGCTGGGC
ATCGGCATCC TGTGCGCGCC GCAGTTCGCG GTGCTGTCCT TCGGCACGGT GTTCCTGCAC
GACTTCGGCC ATGCGGGCCT TGCAACCATC ACGGCCACCA TGGTCTTCGT GCAGGTCGGC
GCGATGGCGA TGCGCGTATG GAGCGGCCGC TGGACCGACC GCCGCCGCAA CCGCCCCGCC
TATCTGCGCG CCTGCAGCGC CCTCAGCGTG CTGCTGTTCG CAGGGCTCGC GATGCTGGTG
ATGGCGGCGG GCACGCACGC GGCCGATTCA GCGGCGCTGC GCATGGCACT GGTGGGGCTG
CTCGCGGCCA GCGGCGTCTG CGTATCGGCC TGGCACGGCG TGGCCTACAC GGAACTGGCC
ACGCTGGCCG GCGCGGCCCG CGCGGGCACC GCCCTCGGCA TGGCGAACAC CAGCGTGTTC
CTGGTGTGCT TCATCACGCC CTTCTCCATC CCGCACCTGC TCGCGCTGCA GGGCTGGCCG
CTGGTGTGGC TTGCGGCCAG CGCCTGCGCG CTGGTGGCGA TGCCGCTGCT GGTGCCGCGG
GCCGCCGCGG CCGGTCAGAA GCTCGCGAAG ACGGCGTTGA GCCGGTCGAC GTAG
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| Protein sequence | MIHSPSSPSC SPRHRWKVLA AGVAANAAFS VAFSGIPMTA VLMRTGYQLD NATLGLVLGL
MGLGIAVSEL PWGLLTDRWG DRPVLLTGLG STAIALVAMA LWAAPSAQHI PGLGWLGAGL
LLVGLLGGSV NGASGRAVMT WFDAGERGLA MSIRQTAVPL GGGIGALVLP FVALHFGFAA
LYGLLAVLCA LSAAMSWAWV HEPPVAPDAP RTRADVAEAA AMPKKSGPLR DARVWCIVLG
IGILCAPQFA VLSFGTVFLH DFGHAGLATI TATMVFVQVG AMAMRVWSGR WTDRRRNRPA
YLRACSALSV LLFAGLAMLV MAAGTHAADS AALRMALVGL LAASGVCVSA WHGVAYTELA
TLAGAARAGT ALGMANTSVF LVCFITPFSI PHLLALQGWP LVWLAASACA LVAMPLLVPR
AAAAGQKLAK TALSRST
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