| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3883 |
|---|
| Symbol | |
|---|
| ID | 7969740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4113280 |
|---|
| End bp | 4115808 |
|---|
| Gene Length | 2529 bp |
|---|
| Protein Length | 842 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644794469 |
|---|
| Product | peptidase S45 penicillin amidase |
|---|
| Protein accession | YP_002945763 |
|---|
| Protein GI | 239816853 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2366] Protein related to penicillin acylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.513553 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACAGA CATCCTCGCG CGGCGCCATG CCGCTGTCCC TGCTCGCGTT GGCCACCGCG
GCCGTGCTCA CTGCCTGCGG CGGCGGTGGA GGCAACGGGT TCTCGTTCCT CCCCGTCACC
GGCCAGCCGC CCGGCAACCC GCCGGCCGAC AGCGCCTACA AGGCCGAGAT CCGCCGTACC
GCGATGGGCG TGCCGCACAT CAAGGCCGAC ACCTGGTCCG GCGCGGGCTA CGGCTACGGC
TACGCGCAGG CCGAGGACAA CCTCTGCACC ATGGCCGACT CGTTCCTCAC CTACCGCGGC
GAGCGTTCGC AGTACCTTGG CGGCGACGCG CAACTGGTGG CCGGCAGCAC CATCGGGCGG
CCGAAGAACA TCGATTCCGA CTTCTTCCAC CGGCACGTGA TCTCGGCCGA CGTGCTCGAG
AAGATGATTG CCGCGCAGCC CGACAACCTC CGGCAACTGG TCGAGGGCTT TGCCGCGGGC
TACAACCGCT ATCTGCGCGA CCTGAAGGCC GGCGGCGCGG CGCACGAGGC CTGCCGGAGC
GAAGCCTGGG TGAAGCCGAT CGCGGCCGAG GACATCTACC GCCGCATGTA CGCGGCCAAT
CTCGCGGGCG GCTACAGCAA CTTCCTGCCG AACATCGCCA ACGCGATCGC TCCGGCACCG
GCTGCGCCCG CCAAGACCGC CGCGCGCGGC AGGCTCGGCA AGGCGGGGCT GCAACTCGCG
GCAGCCGGCA TGCGCATGCC CGAGCTGCAG GTGGGCGGGC ACGAAGGCGT CGGCAGCAAC
ATGATCGGCT TCGGCTCCGC GGCCACCGGC GACGCGAGCC CGCTGCTCTT CGGCAACCCG
CACTGGTACT GGCGCGGGCC CGACCGCTTC TACCAGGCGC AGCTCACGAT CCCGGGCCAG
CTCAACATCA GCGGCACCTC CTTCCTGGGC GTTCCGGTGA TCCTGATCGG CTTCAACGAC
AACATCGCAT GGAGCCACAC GGTGTCGACC GCGCGCCGCT TCGGCTTCTT CGAACTCAAG
CTGGCGGCGG GCGACCCGAC CCGCTACATG CGCGACGGCA GCGCCGTGAA GATGCAGGCG
CTGAACATCA CGGTCGACGT GAAGCAGGCC GACGGCAGCA TGGCGCCGGT GACGCGCACG
CTCTACAAGT CGGAGTACGG GCCGATGGTC AACCTGGCGC CGCTGAACGC CGCGCTGGCC
TGGAGCCAGA CCACGGCCTT TGCGATCCGC GACATCAACG GCGAGAACTA CCGCACCTTC
CGCAACTGGC TGCGCTGGAA CCAGGCGAAG TCGCTCGACG AGTTCATCGC CATCCAGCGC
GAGGAGTCGG CCATTCCGTG GGTCAACACC GTGGCCGTGG GCCGCGGCGC GCCCAAGGCC
TGGTATGCCG ACATCGGCGC GGTCCCCAAT GTGTCGCCCG CCCAGGTGGC GAGCTGCACG
ACGCCGCTGG GTGCGGCGAT CGGCGCTTCG CTGCCGCGCG TGCCGGTCTT CGATGGCTCC
AGGAGTGCCT GCGACTGGCA GACCGATGCC GATTCCGCCC AGAAGGGCGC GCTCGGCGCC
TCCCGCATGC CGAGCCTGAT GCGCGAGGAC TACGTCGAGA ATTCGAACGA CAGCTACTGG
CTCGCGAACC CGAAGGCGCC GATGACCGGC TACCCGGACA TCATGGGTCC GGCCGGCACG
GAGGCCGTGA GCTTCCGCAC GCGCCTGGGC AACCTGCTGG CGCAGGGTCG CATCGACGGC
ACCGACAACT ACGCCGGCAA GGCGGCCACC GCCGACACCG TCAAGCAGAT GGTGCTCAAC
AGCCGCGTGC TGACGGCCGA GCTGTTCAAG GACCAGGCGC TGGCCATGGT GTGCGCCACG
CCAACGATCA ACGTGGCAAC CGATCCGCAA GGCGGCGCCG CCATCGGGCG CGACGTGGAC
ACCGGCCCCG CCTGCGCGGC GCTCCAGGCC TGGAACAACA CCGGCGTGAC CGGTGCGCGC
GGCGCCCACG TCTGGGACGA GTTCTGGAGC CGCGCCGCAC TGCAGCCATC GGCCACGCTC
TACAACGTGC CCTTCAGCGC GAGCGATCCG ATCCACACGC CGCGCGACCT GAAGCCCGGT
GCGCAGGCCG CGCTGCAGCA GGCCTTCGGC GCAGCCATCG CGCGCGTGGA AGCCAGCGGC
TTCGCACTCG ATGCGCAGCG CGGCGACTAC CTGTTCGCCA CGCGCGGCGG CCAGAAGATA
CCGCTGTACG GCGGCTGCCA CGGCCCGGGC TACTTCACCA TCGCCTGCTC GGAGAACCGG
CTCGACAAGG GCGGCTACAC GATGGACGGC AACCCGAACG GCAACAGCTA CATGCAGGTC
GTGCGCTTCC CCGAAGGCGG CGTGGAGGCG CATACCTTCC TCACGTTCTC TCTGTCGGAC
GACCCGGCCT CGGCCCACAA CGCCGACTAC ACGCGCGCCT ACAGCGCGGG GCAGTGGCAG
AGGGTGCCGT TCTCCGAAGC CGAGATCAAG GCCGACGCGG CCTACCGCAG CGCGGTGGTG
AGCGAATAG
|
|---|
| Protein sequence | MRQTSSRGAM PLSLLALATA AVLTACGGGG GNGFSFLPVT GQPPGNPPAD SAYKAEIRRT
AMGVPHIKAD TWSGAGYGYG YAQAEDNLCT MADSFLTYRG ERSQYLGGDA QLVAGSTIGR
PKNIDSDFFH RHVISADVLE KMIAAQPDNL RQLVEGFAAG YNRYLRDLKA GGAAHEACRS
EAWVKPIAAE DIYRRMYAAN LAGGYSNFLP NIANAIAPAP AAPAKTAARG RLGKAGLQLA
AAGMRMPELQ VGGHEGVGSN MIGFGSAATG DASPLLFGNP HWYWRGPDRF YQAQLTIPGQ
LNISGTSFLG VPVILIGFND NIAWSHTVST ARRFGFFELK LAAGDPTRYM RDGSAVKMQA
LNITVDVKQA DGSMAPVTRT LYKSEYGPMV NLAPLNAALA WSQTTAFAIR DINGENYRTF
RNWLRWNQAK SLDEFIAIQR EESAIPWVNT VAVGRGAPKA WYADIGAVPN VSPAQVASCT
TPLGAAIGAS LPRVPVFDGS RSACDWQTDA DSAQKGALGA SRMPSLMRED YVENSNDSYW
LANPKAPMTG YPDIMGPAGT EAVSFRTRLG NLLAQGRIDG TDNYAGKAAT ADTVKQMVLN
SRVLTAELFK DQALAMVCAT PTINVATDPQ GGAAIGRDVD TGPACAALQA WNNTGVTGAR
GAHVWDEFWS RAALQPSATL YNVPFSASDP IHTPRDLKPG AQAALQQAFG AAIARVEASG
FALDAQRGDY LFATRGGQKI PLYGGCHGPG YFTIACSENR LDKGGYTMDG NPNGNSYMQV
VRFPEGGVEA HTFLTFSLSD DPASAHNADY TRAYSAGQWQ RVPFSEAEIK ADAAYRSAVV
SE
|
|---|
| |