| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3870 |
|---|
| Symbol | |
|---|
| ID | 7969727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4099421 |
|---|
| End bp | 4100245 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794456 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002945750 |
|---|
| Protein GI | 239816840 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.685954 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCCG TTCTTTCCAT CGACCGCAAC GCCCCCCAGC CGCTCGAGCT CAACCCCTAC
CCGCAGCAGA AGTACTGGTT CGACCCCATC CCCCCGCGCA CCAGCGTGCA GGCTGAGCGC
CGCCACCGGC AGGAGCGCTT GGCAGGCGCG TTCCGCCTGT TCGCGCGCTT TGGCTTCGCC
CAAGGCCTCG CGGGCCACAT CACCGCGCGC GACCCGGAGC TCAGCGATCA CTTCTGGGTC
AACCCGCTGG GCATCCACTT CTCGCGCATC AAGGTCTCGG ACCTGCTGCT CGTCAATTCG
AAGGGCGAGA CGGTGATCGG CGACCGGCCG CTCAACAAGG CCGCCTTCGC CATCCATGCC
GCGATCCACG AGCACAACCC GAAGATCGTT GCCGCCGCCC ACACGCATTC GACCTACGGC
AAGGCCTGGT CGACGCTCGG CCGCAAGCTC GACACGATCA CGCAGGACAG CTGCGTGTTC
CACGGCGACG TGGCGCTGTT CGACGACTTC ACCGGCATGG TGGTCGACAC CAGCGAGGGC
GAGCGCATCG CGCGGGCGCT GGGCGACAAG AAGGGCGCGA TTCTCAAGAA CCACGGCATC
CTGACTGCGG GCCCGACGGT GGAGGCCGCC GCGTGGTGGT ACATCGCGCT CGACAACGCC
TGCCACACGC AACTTCTCGC CGAGGCCGCC GGCAAGCCGC AGCCCATCGA CGAGGAAACC
GCGCGCCACA CGCACAGCCA GATCGGAGGG CCGGAGGGGG CCATCCATTC CTTCGACAGC
CTTTATCAAG GCCTGGTCGA GGCGGAGCCC GAACTGCTGC TCTGA
|
|---|
| Protein sequence | MNAVLSIDRN APQPLELNPY PQQKYWFDPI PPRTSVQAER RHRQERLAGA FRLFARFGFA
QGLAGHITAR DPELSDHFWV NPLGIHFSRI KVSDLLLVNS KGETVIGDRP LNKAAFAIHA
AIHEHNPKIV AAAHTHSTYG KAWSTLGRKL DTITQDSCVF HGDVALFDDF TGMVVDTSEG
ERIARALGDK KGAILKNHGI LTAGPTVEAA AWWYIALDNA CHTQLLAEAA GKPQPIDEET
ARHTHSQIGG PEGAIHSFDS LYQGLVEAEP ELLL
|
|---|
| |