| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3869 |
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| Symbol | |
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| ID | 7969726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4098385 |
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| End bp | 4099398 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794455 |
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| Product | NMT1/THI5 like domain protein |
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| Protein accession | YP_002945749 |
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| Protein GI | 239816839 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.478553 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCTT CTTTCTCACG CCCCGTATCG CGCCGGGGTG TCCTGCGCGG AGGCGCCGCC
GCTGCCGTGG TCGCCTCTGG CGGCCTGATC GCCTCGCAGG CCTTCTCGCA GCAGGCGCGC
AAGCTCACCT TTGCATGGAA CGCCGCCGCG TTCTGCCTCT CGCCCGTCGT CGTCGCGCAG
GAGCGCGGCT ACTTCGAGCG CAACGGCCTG CAGGTGGACC TGATCAACTA CACCGGTTCC
ACCGACCAGC TGCTGGAGTC GCTGGCCACG GCCAAGGCCG ATGCGGCGGT GGGCATGATC
CACCGCTGGC TCAAGCCGCT GGAGTCGGGC TTCGACGTGA AGATCGTCGG CAGCTCGCAC
GGCGGCTGCG TGCGGCTGGT GGGTGCGAAG AGTGCGGGCG CGACCAGCCT TGCGAGCCTC
AAGGGCAAGA TCATCGGCGT GTCGGACATC GCGAGCCCCG GCAAGAACTT CTTCTCGATC
CTGCTCGCGA AGAACGGCAT CGATGCCGAC AGGGACGTGA CCTGGCGCCA GTACCCGGCC
GACCTGCTCG ACATTGCGGT GCAGAAAGGC GAGATCCACG CCATTGCCGA TGGCGACCCG
AACGTTTACC TGATCGAAAA GCGCAACAAG GACGCCTTCG TGGAGATTGC GAGCAACCTC
TCGGGCGAAT ACAAGGACAA GGTCTGCTGC ATCGTCGGCG CGCGCGGCGA ACTCGTTCGC
AAGGACAAGC CGACCGTCGC GGCCCTCGTG CGCGCCATCG CGCAAGCCTC CGACTACGTG
GCCGAGAACC CGAACGAATC GGCCAAGCTG TTTGCGAAGT ATTCGCCCAA GGTGCCGGTC
GAAGACCTGC GCGCGCTGCT TGGCACGCTC ACGCACAACC ACCATCCGCT CGGCAGGAAC
CTGCGCGACG AGGTGGAGTT CTATGCGCGA GATTTCCGCG GCGTTGGCGT GCTCAAGAAG
ACCACCGATC CGGTGCGCTT TGCCGAGCAC GTCTCTTTCG ATCCACTCGC ATGA
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| Protein sequence | MTASFSRPVS RRGVLRGGAA AAVVASGGLI ASQAFSQQAR KLTFAWNAAA FCLSPVVVAQ
ERGYFERNGL QVDLINYTGS TDQLLESLAT AKADAAVGMI HRWLKPLESG FDVKIVGSSH
GGCVRLVGAK SAGATSLASL KGKIIGVSDI ASPGKNFFSI LLAKNGIDAD RDVTWRQYPA
DLLDIAVQKG EIHAIADGDP NVYLIEKRNK DAFVEIASNL SGEYKDKVCC IVGARGELVR
KDKPTVAALV RAIAQASDYV AENPNESAKL FAKYSPKVPV EDLRALLGTL THNHHPLGRN
LRDEVEFYAR DFRGVGVLKK TTDPVRFAEH VSFDPLA
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