| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3863 |
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| Symbol | |
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| ID | 7969720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4091771 |
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| End bp | 4093090 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644794449 |
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| Product | Sel1 domain protein repeat-containing protein |
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| Protein accession | YP_002945743 |
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| Protein GI | 239816833 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.986909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGACA GCAAGCTGCC GCGCTTCACG AGGCTCGACA AGTTCGATCC GCACCGGAAG
GACTTCGTGT GCAAGCATGA GGCCGAAGCC AACCCGCCCA TCACGGCAGA AGCCGAAGCA
CTGTTCCAGC AGGCGCTGGC GCTGGTGAGC TACGAGATGT GGTCGGAGAA TCGCAACTAC
GCCAGGGCGG CACAGCTGTA CGAGCAGGCA ATGAAGCTGG GCCACTGGAA GGCGCAGTTC
AACCTGGCGG GGCTGTATCT GCAAGGTCTA GGCATCGAGC AAGACTCCGA GAAAGCCATC
GAGTTGACCG AAGACTTGAT GCGCAAGGGC GTGCCCGCGG CCTGGGACAA CATGGGCACG
ATGTACATGG GCGGCATTGG GTCGCTCAAG CAGGATGCGA CCGTGGCGTA CGCGTTCTGG
CAGAAGGCTG CAGACATGGG GAGCATGGCA TCGCAGGCGT ACATCGGAGC CAAGTTGAAG
GCCACGCACG ACGAACCACC GACCTTCTGG GGAAATCGCC TTGTCGGGTT GAAGATGCTT
GAATGCGCGT TCGCCCAAGG CTCTGCGAAG GGCGCCTATG AATTGGCGAT CACACTCGTG
GGCAACAATC CCGCGCTTCA AGAGAATGAC GAGCGGGCAC TCAGAGTCTT TCACGAAGGT
GTCAAGCTTG GCAGTCAACA AAGCGCTGGC TATTTGAGTT CTTCATTTCG ACACGGAGAA
AAGCCCGTAC AAGGAGGTCC GGATACATCA AGGGCTGATC GCTACCACGC TCTTGCCAAC
GCGCTTTACT ACAACCCCGA CCTGCGCTTC CCCAACCTCG ACAAGGTGCT TCCCCTTCCC
CCGGCACAGT TGCCCCAGTG GGACATGAGC GCCCCCAAGA CGCTCATCGA TGCCGCCAAG
GCGGTGGTGC CGCCTGCCTC TTCGCCACCG CAGCAAGCAC CGGCATCAAC ATCCCAACGC
ACCAGTCAGT TCGAAAGCGC CGAGCGAGGC ATGCTGGCCA CTCACACGCG CGTGGCCCAG
GGCATCGCAC GAGAAGCCGA CTTGCCGAAA CCACTGGTTC GATGCAGCGG CGCCGGGCGC
TGCCTTGTCA CGGGCATCTG GCAGGCACGC GTGCCCGACG ACCACGCGCT CGCCGCATCG
TTCAACCAGT GGCATCGCCA GTCCTATGTG ATGGAGGGCC AGCCCTTCCC CGATCCGCGC
GAACAGCACC TGGACATCGA TCCGGCGCAG GTCATTTGGA CCTGGTGGAA CCAGGCCAAC
CATCTGGGCT TCGCCAGGAT TCCGCAGGTC AGCGTGGGCA ATCCGCCCGT CGCGGGGTAA
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| Protein sequence | MSDSKLPRFT RLDKFDPHRK DFVCKHEAEA NPPITAEAEA LFQQALALVS YEMWSENRNY
ARAAQLYEQA MKLGHWKAQF NLAGLYLQGL GIEQDSEKAI ELTEDLMRKG VPAAWDNMGT
MYMGGIGSLK QDATVAYAFW QKAADMGSMA SQAYIGAKLK ATHDEPPTFW GNRLVGLKML
ECAFAQGSAK GAYELAITLV GNNPALQEND ERALRVFHEG VKLGSQQSAG YLSSSFRHGE
KPVQGGPDTS RADRYHALAN ALYYNPDLRF PNLDKVLPLP PAQLPQWDMS APKTLIDAAK
AVVPPASSPP QQAPASTSQR TSQFESAERG MLATHTRVAQ GIAREADLPK PLVRCSGAGR
CLVTGIWQAR VPDDHALAAS FNQWHRQSYV MEGQPFPDPR EQHLDIDPAQ VIWTWWNQAN
HLGFARIPQV SVGNPPVAG
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