| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3860 |
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| Symbol | |
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| ID | 7969717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4086685 |
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| End bp | 4088760 |
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| Gene Length | 2076 bp |
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| Protein Length | 691 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794446 |
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| Product | phospholipase D/Transphosphatidylase |
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| Protein accession | YP_002945740 |
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| Protein GI | 239816830 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1502] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGATC TGAGCAAGCT CCTCGACGAA ATCCAAAGGC CCGAAGTCAG CCACGTCGAC
ATGATCAAGC GGCGCAGCAA GGGCACGCTG CAGTGGTTTC TGGAGAAGGA CCACAAGACG
CACCCGATCC ACGACAACAA CGCACTGCAG TTCTTCATGT GCGGCCAGGA AGGCTTCGCG
GCCATCGAGA AAGACATCCT CGCGGCCGGC AGCAGCATCG ACCTGGTGCT GTGGGGTTTC
GATCCCGGCA TGGAACTGAC GCGTTCGCGA AACACCTGGC CGCGCGGCAC CACCTATGGC
GACCTGCTGG TGCGCAAGGC CGGCGAAGGC GTCAAGGTGC GCATGCTGCT GTGGTTCGAC
AACCTGGTGG TCAACAAGGC GGCGGGCAAC GTGCCGGACT TTCCCGTGTT CTGGGCACCC
ACCTCGTTCT CCAAGACCAG CCGGACCACC TGGCCCGAAG GCGCCGGGTC CTACGACGAC
CGCTCCAATT CCGCATGGGT GCTGACCGAC CGCTCCAACT ATTGCAAGCA GTGGTGGGAA
GACGCGCTGG CCGGGCGTTT CAAGAACCTG GAAGTGCGGC TGCGCCGTGG CAGCCCGCTC
GAAATCCACT CCAACCTGTC GCGCTACCTG CCAGACTCGA AGCGCGACCT GAGCGAGGCC
GCCACCATGA TCGCGGTGGG CACCCACCAC CAGAAGCCGA TCCTGATCGA CTACGAGCCC
GCCACCGGTG GCAGGCCGCG CAACGTCTGC GGCTACGTGA TGGGCCTGAA CAGCGTGACC
GACTACTGGG ACACCACGGC GCACGCCTTC AACGACCCCC GGCGCGAGCT CAGCCCCAAC
GGCTACACCT ACTACGACGA GGTCCGCTGG CACCGCAAGC CGTACCGGGA CTACGCGATC
CGGGTGCAGG GCGAGGCGCT GCACTGCCTG AACCGGAACT TCGTGCAGGG CTGGGACAGC
GCCGCGGGGG TGCAGGTGAT CCCGGGGCCC GCGGGCAGGT TCTTTCCTGC CAACGGGGCG
GGGGCGTTCA GCGCAAAGCT GGCCGCCCAG CGCCAAGCGG TCCAAGCCAA GGACATCCCG
CGTCCATTAG GCGCGCGCTG CCGGGTGCAG ATCCAGCGCA CCCAGCCGGA ATCCGACGAC
GGCACCATCC TCAAGGGCTA CACGCTGGCC AGCGCCAACG CGCTGAACTA CATCTACATG
GAGAACCAGT ACTTCCAGCT GAGCGAGTGG CCCAGGCTGC TCAAGGACGT GCGCAAGCGC
TACCGCCGGG CCATGCAGGA GGCCGGCGCG GCGCCCAGCG ACATGGCGCC GCTGCACATG
TTCGTCGTGA TCCCGCAGCC CGAGCGCGGC CAGATGGTCC CCAGCACCTA CGACACGGTC
GGCACGCTGG GTGCTGGCGC CCAGATGGGT GAGTACGACA AGAAGGTGCA AGGGGAGCGG
AAGCGCCGGC AGGCGGGAGC AGGGGGCAGC GGCGGGCTGG TGGGCGCGTC GGCCGACACG
GTGCCGATGG ATGCGCAGGC GCAGCTGCAG GAACTGGGCA TCAAGCCGCT GGTGGCGATG
CTGCTGACCT TCGACAGCGC GAACCAGGCG AAGAGCATCC GCGTCAAGGC GCGCGACAGC
GAGGCGCAGG ACGCACAGGC GGGGGTGGAG GAGAAAGCCA GGGGCCATGC CGACGACGTG
AACCCGGAAA ACCTGAGCGA CTTCAACATC ACGCCCAGGC GCTACCGGGA GATCTACATC
CACAGCAAGC TGATGATCGT GGACGACGTG TACTTGACGC TCGGCAGCGC AAACCTGAAC
GCGCGCAGCA TGGCGGCGGA CAGCGAGTTG AACATGTGCA CGGAGGAGTA CGCGTTCACG
AAGGCGGCGA GGAAACGGGT GTGGGGGAAT CTGGCGGGAG GTGACTTGGA TGGGAAAGAC
TGTACGCGGA TGGAGACTGC AGATACCCAT GAGAAGTGGC TAACACGAAT GAATACCAAC
AAGGAAAACC GCATAAAGAA TCTGGGGCCT GAAAGCAACA GCCTCATCCA TCCCTTTGAG
GACCCTCGCG GAGTCCCTTT CGTCAAGTTT GCTTAG
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| Protein sequence | MADLSKLLDE IQRPEVSHVD MIKRRSKGTL QWFLEKDHKT HPIHDNNALQ FFMCGQEGFA
AIEKDILAAG SSIDLVLWGF DPGMELTRSR NTWPRGTTYG DLLVRKAGEG VKVRMLLWFD
NLVVNKAAGN VPDFPVFWAP TSFSKTSRTT WPEGAGSYDD RSNSAWVLTD RSNYCKQWWE
DALAGRFKNL EVRLRRGSPL EIHSNLSRYL PDSKRDLSEA ATMIAVGTHH QKPILIDYEP
ATGGRPRNVC GYVMGLNSVT DYWDTTAHAF NDPRRELSPN GYTYYDEVRW HRKPYRDYAI
RVQGEALHCL NRNFVQGWDS AAGVQVIPGP AGRFFPANGA GAFSAKLAAQ RQAVQAKDIP
RPLGARCRVQ IQRTQPESDD GTILKGYTLA SANALNYIYM ENQYFQLSEW PRLLKDVRKR
YRRAMQEAGA APSDMAPLHM FVVIPQPERG QMVPSTYDTV GTLGAGAQMG EYDKKVQGER
KRRQAGAGGS GGLVGASADT VPMDAQAQLQ ELGIKPLVAM LLTFDSANQA KSIRVKARDS
EAQDAQAGVE EKARGHADDV NPENLSDFNI TPRRYREIYI HSKLMIVDDV YLTLGSANLN
ARSMAADSEL NMCTEEYAFT KAARKRVWGN LAGGDLDGKD CTRMETADTH EKWLTRMNTN
KENRIKNLGP ESNSLIHPFE DPRGVPFVKF A
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