| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3848 |
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| Symbol | |
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| ID | 7969705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4070439 |
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| End bp | 4071959 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794434 |
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| Product | transcriptional regulator, GntR family |
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| Protein accession | YP_002945728 |
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| Protein GI | 239816818 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAACC CCAGAGCCAC TCAATGGGCG CAGCTCTTCG CGCTGCCCGA CCAGCCCGCC
TTGCCGCTGC AGGCCCGTCT GCGCGCCGCC GTGGTGCAGG CCATCCTCGA GGACCACCTG
AGCCCCGGTG CCTCGATGCC CTCGTCGCGC GAGCTTGCCG CTCTGCTCGG GCTGAGCCGC
AACACCGTCA CTTCGGCCTA CCTGCAATTG ATCGACGAAG GCTTCCTGGA AGCGCGTCCG
CGCAGCGGCG TGTTCGTGGC GCACAACGCG CGGCCGCTGT CCGCTGCGCA TGCGGAGCCG
CTGGTGGGCC GCAGCGGACA GGCCAGCCAG CCGCCCGACT GGTCGGGGCG CGTGCTGCGC
TCGCTGGAGG GCAAGCCCAC GCTCGCCAAG CCCGACCGCT GGCGCGACTA TCCGTTCCCG
TTTGTCTACG GCAACTACGA CCCGCAGCTT TTTCCGACCG AGGATTTTCG CGAGTGCTGC
GCGCGCAGCC TGGCGCGCTC GCAGCTGCCG CACTGGACGC CCGACTTCGA GACCGACGAC
GTGCCCGACC TGATCGAGCA GATCCGCACG CGCTTGCTGC CCAAGCGCGG CGTGTTCGCG
CTGAAGGAAG AAATCCTGGT GACGCTCGGC GCGCAGCATG CGTACTACCT CTTGGCCGAT
GCGCTGTTCG ACGAGCACAC CCGCGTCGGC CTGGAAGAGC CCGGCCATCC GCATGCGCGC
AACAGCTTCT CGATGCGCAA CCCCAAGTGG GTCGAGGTGG CGGTGGACGA GGAGGGCCTG
GTGGTCGATG CGCTGCCCGC GGCCGACTAT CTCTTCGTGA CCCCTTCGCA CCAGAGCCCG
ACCACCGCCA CGCTGAGCCT GGAGCGCAGG CAGTGGCTGC TGCGCAAGGC CGAGCTGCAG
GACTTCGTGA TCATCGAGGA CGACTACGAG GCCGAGAACC TGTACGAAGG CACGCCGATG
CCGGCGCTCA AGAGCCTGGA CAAGACCGGG CGCGTGATCT ACGTGGGCTC GGTGTCCAAG
AGCCTTTCGC CCGCGCTGCG GCTCGGCTTC ATCGTGGCGC CGCGCGCGCT GATCAAGGAA
CTGCGCGGCA TACGGCATGC GATGGTCCGG CATCCGAGCG CCTTTCTGCA GCATGCGTAC
GCGCTGTTCC TGTCGCTCGG GCACCACGAG TCGCATGCGC GGCGCGTGAA CCATGCGATG
CAGGAGCGGC TTGCGCTTGC GGCCAAGGCG CTGCGCGAGC ATCTGCCCGA GTTCGAGTTC
ACGCTGCCGC AGGGCGGGGC GTCGATCTGG GTGCGGGCGC CGGCGTGGGT TGACGCGGGC
GAGCTGTCGC TGATGGCGCG CAGCCATGGG GTGCTGATCG AGGCGGGGGA TGTGTTCTTT
GCGAAGCCGC CTTATCCGTG TCCGTTTTTT CGGTTGAGGT TGTCGTCTAT TGCGGCTTCG
CAGATTCCTT TGGGGATTCA GGCCTTGGGG ATGGCTGTTG GGGAGTTGGC GTTGGCTCGG
GGGGAGGTGA GGGCGCATTG A
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| Protein sequence | MANPRATQWA QLFALPDQPA LPLQARLRAA VVQAILEDHL SPGASMPSSR ELAALLGLSR
NTVTSAYLQL IDEGFLEARP RSGVFVAHNA RPLSAAHAEP LVGRSGQASQ PPDWSGRVLR
SLEGKPTLAK PDRWRDYPFP FVYGNYDPQL FPTEDFRECC ARSLARSQLP HWTPDFETDD
VPDLIEQIRT RLLPKRGVFA LKEEILVTLG AQHAYYLLAD ALFDEHTRVG LEEPGHPHAR
NSFSMRNPKW VEVAVDEEGL VVDALPAADY LFVTPSHQSP TTATLSLERR QWLLRKAELQ
DFVIIEDDYE AENLYEGTPM PALKSLDKTG RVIYVGSVSK SLSPALRLGF IVAPRALIKE
LRGIRHAMVR HPSAFLQHAY ALFLSLGHHE SHARRVNHAM QERLALAAKA LREHLPEFEF
TLPQGGASIW VRAPAWVDAG ELSLMARSHG VLIEAGDVFF AKPPYPCPFF RLRLSSIAAS
QIPLGIQALG MAVGELALAR GEVRAH
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