Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3838 |
Symbol | |
ID | 7969695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4059940 |
End bp | 4060425 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644794424 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_002945718 |
Protein GI | 239816808 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.696628 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACACC TGATGCGCAA CGACCGAGCG GGCGCGCTTC GCCTGCTGGA GCAGCTGGAG TCCGGGCATT CGCCGATGCG GCCCCATGGC GCCGGCAGCA GCGGCCTGCG CACAAGTCCG CGCATCGCCG CCAAGGCACC GGGCCGCAGC GAGTTCCGCC GCGCCGCATG GCAGGCCGAC CGCTACCGGC GCGCGGGGCT GGAGCATGCG GTGGCGGTGG CCTTCCTGTA CCGGCTCGCC TGCCGCGCCG CGGTTCCGCT GCATGATGTG CCGCTCTCCG ATGCCCCGCT GGCCGGCCTC ACGCCGCGCG AGGGCGACGT CATGCATTGG CTTTCGCGCG GCAAGACCGA CGCCGAGATC GCCGCGCTGC TGGAGATCAG CCCGCGCACC GTCCACAAGC ACCTGGAGCA TGTGTACGTG AAGCTGGGCG TCGAGACGCG CACCGCGGCC GTGGTGCGCG CGCTGGCCAT GGGCAGGACC TCCTGA
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Protein sequence | MTHLMRNDRA GALRLLEQLE SGHSPMRPHG AGSSGLRTSP RIAAKAPGRS EFRRAAWQAD RYRRAGLEHA VAVAFLYRLA CRAAVPLHDV PLSDAPLAGL TPREGDVMHW LSRGKTDAEI AALLEISPRT VHKHLEHVYV KLGVETRTAA VVRALAMGRT S
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