| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3819 |
|---|
| Symbol | |
|---|
| ID | 7969676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4036744 |
|---|
| End bp | 4037919 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794405 |
|---|
| Product | Altronate dehydratase |
|---|
| Protein accession | YP_002945699 |
|---|
| Protein GI | 239816789 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2721] Altronate dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.257566 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATCA TTTCCAAAGA CACCACCTTC CTCGGCTACC GCCGCGAAAA CGGCCGCGTC
GGCGTGCGCA ACCACGTCAT CATCCTGCCG CTGGACGATC TCTCCAACGC GGCCGCCGAA
GCGGTGGCCC ACAACATCAA GGGCGCGCTG GCCATTCCGC ATCCCTACGG CCGCCTGCAG
TTCGGCGCCG ACCTGGAGCT GCACTTCCGC ACGCTGATCG GCGCGGGCTG CAACCCGAAC
GTGGCGGCGG TCGTGGTCAT CGGCATCGAG GACAGCTGGA CGCAGAAGGT GGTCGACGGC
ATCGCCACCA CGGGCAAGCC GGTGGCCGGC TTCGGCATCG AGGGCCACGG CGACCACGAC
ACCATCCTGC GCGCAAGCAA GGTGGCGCGC GAATTCGTGC AGGTGGCCAG CGAGAAGCAG
CGCGAGCCCT GCGGCATCCA CGAGCTGTGG GTGTCCACCA AGTGCGGCGA GAGCGACACC
ACCTCGGGCT GCGGCTCCAA CCCGACCGTG GGCAACGCCT TCGACAAGCT CTACGAGACC
GGCAACACGC TGGTGTTCGG CGAGACCTCC GAGATCACCG GCGGCGAGCG CATCGTGGCC
GACCGCTGCC GCACGCCCGA CGTGAAGGAG CGCTTCATGT TCATGTTCAA CCGCTACCAG
GACATGATCA ACCGCCACAA GACCAGCGAC CTGTCGGACT CGCAACCCAC CAAGGGCAAC
ATCGCGGGCG GCCTGACGAC CATCGAGGAA AAGGCGCTCG GCAACATCCA GAAGATCGGC
AAGAAGTGCA TGGTGGACGG CGTGCTCGAC AAGGCCGAGG TGCCCACCGG CCCGGGCCTG
TGGTTCATGG ACTCGTCCAG CGCGGCGGCC GAGATGGTCA CGCTGTGCGC CGCATCGGGC
TACGCGGTGC ACTTCTTCCC CACGGGCCAG GGCAACGTGA TCGGCAACCC GATCCTGCCG
GTCATCAAGA TCTGCGCCAA TCCGCGCACC GTGCGGCTCA TGAGCGAGCA CGTCGACGTC
GACACCTCGG GCCTGCTGCA GCGCGAGATG ACGCTCGACC AGGCCGGCGA CCAATTGCTC
GAATGCATGC TGCGCACCGC CAACGGCCGG CTCACGGCGG CGGAAGCGCT GGGCCACCGC
GAGTTCGTGC TGACGCGGCT GTACGAGTCG GCCTGA
|
|---|
| Protein sequence | MSIISKDTTF LGYRRENGRV GVRNHVIILP LDDLSNAAAE AVAHNIKGAL AIPHPYGRLQ
FGADLELHFR TLIGAGCNPN VAAVVVIGIE DSWTQKVVDG IATTGKPVAG FGIEGHGDHD
TILRASKVAR EFVQVASEKQ REPCGIHELW VSTKCGESDT TSGCGSNPTV GNAFDKLYET
GNTLVFGETS EITGGERIVA DRCRTPDVKE RFMFMFNRYQ DMINRHKTSD LSDSQPTKGN
IAGGLTTIEE KALGNIQKIG KKCMVDGVLD KAEVPTGPGL WFMDSSSAAA EMVTLCAASG
YAVHFFPTGQ GNVIGNPILP VIKICANPRT VRLMSEHVDV DTSGLLQREM TLDQAGDQLL
ECMLRTANGR LTAAEALGHR EFVLTRLYES A
|
|---|
| |