| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3752 |
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| Symbol | |
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| ID | 7970909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3969460 |
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| End bp | 3970005 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794336 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_002945634 |
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| Protein GI | 239816724 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.401428 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCGAG AGCCGGTCGA CAGCGCGCTG CACCTTTCGG AGCCCACGCT CGCGGAGGTC
TTCATCGCGA ACCGTGCCCA GCTCCTGCGC GTGGCGCGAA GGATCGTTCG CACCGCGGAG
CTGGCCGACG ATGTGGTGCA GGACGCCTAT CTCAAGATCA CCGACGGCCC TTGCGTGCGC
AAGGCCGACC GGCCGATCGG CTATTGCTGC CAGGTGGTGC GCAATGTCGC GCTCGACTGC
TGCCGGCGCC ACACTGTCGA GGCCAACTAC CGCACTTTCG ATGTCGATGT CGAAGCGCTC
GATGTCGCCG GCGCGCCCAC CCCCGATCGC CTGATGCGCG AACGCCAGGC GATCCAGGCC
ATCGACAAGG TGCTCGCAGA GCTTCCTGCG CGCACGCGCC TGGTGTTCGA GCTCTACCGG
CTCGAGGGTC TCACCCAGCG CGAGATTGCG CAGCGCCTCG GATGCGCGCT TGGACTGGTG
AACGGCCTGA TTGCCGAGGC GGCGCAGGCG ATCAAGGAAT GCGGCCGCCT GCTCGAGGAC
GATTGA
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| Protein sequence | MMREPVDSAL HLSEPTLAEV FIANRAQLLR VARRIVRTAE LADDVVQDAY LKITDGPCVR
KADRPIGYCC QVVRNVALDC CRRHTVEANY RTFDVDVEAL DVAGAPTPDR LMRERQAIQA
IDKVLAELPA RTRLVFELYR LEGLTQREIA QRLGCALGLV NGLIAEAAQA IKECGRLLED
D
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