| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3736 |
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| Symbol | |
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| ID | 7970893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3932878 |
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| End bp | 3934569 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794320 |
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| Product | cyclic peptide transporter |
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| Protein accession | YP_002945618 |
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| Protein GI | 239816708 |
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| COG category | [P] Inorganic ion transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4615] ABC-type siderophore export system, fused ATPase and permease components |
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| TIGRFAM ID | [TIGR01194] cyclic peptide transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACCGA CCACCACGAC CCCCCGTGGC AACACCTCCG AACTCGGGCG CCTGCTCAAG
CCGTTTCTAC CGTGGGTCCT CCTGTCCACG GTCACGGGCA TCAGCGCGGG TGCGGCCACC
GTCGCGCTGC TGGGCACCAT CAACCAGGTG CTCAACCGCG AGGGCGGCAT GGCGGGCGGG
CTGCTGCTGA CCTTCGTCGG GCTGTGCGCG GTGGCGCTGC TGGGGCGCAT GGCCTCGGAC
GTGTCGACCA ACTTCGTCGG CCAGCGGCTG GTGGCGCAGG TGCGCAAGAG CCTCGCGCAG
AAGATTCTCT CGGCGCCCAT CGATGCACTG GAGCGCTACC GCACGCACCG GCTGATGCCG
GTGCTGTCGC AGGACGTGGA CATGATCAGC GACGTGGCCT TCGTGCTGTC GTCCACGCTC
ATCGCGTTCG CGATTGCGCT GGGTTGCCTG GCGTACCTCG CCTACCTGTC GCTGCCGCTG
TTCTGCCTCT TGGTGGTGGC GCTCGCGATC GGCGCGACCA TCCAGACGCG CGCGCAGGTG
CGCGCCGAGG TGGGTTTCTG GAAAGCGCGC GAATACGAGG AGCAGCTGCA CAAGACCTAC
CGCGCGATCA GCGAAGGCGC GAAGGAATTC CGCATGCACC GCGCGCGCCG CACGCGGATG
TTCGGCGGGC AGATCGAGCG CATCGTGGAC AACATCCGCA CCGTGAACGG ACGCGCCATC
AACACCTATG TGATGGCGAC GGCCTTCGGC TCGGCGCTGT TCTTCCTGCT GATCGCGCTG
ATCCTGGGCT GGGCCGCGTT CCGGCCGACC GAGCCCGCGG TGCTGAGCGG CTTCGTGCTG
GTGATGCTGT TCCTGAAGGG ACCGGTGGAC CAGATCGCGG GCGCGCTGCC GGGCGTGGGC
CGGGCCAGGA TCGCGTTCCG GCGTATCGCC GACCTGTCGG CGCGCTTTGC AACGCCGGAG
CCGCACCTGC ACCTGGAGCG CGCATCCAAC GGCGTGATGC TCAACCGCGA GATCGCCATG
CGCGGCGTGT GCTACCGCTT CGATGCGCCC GAAGGCGGCG AGGCTTTCAC GCTCGGCCCC
ATCGACCTGC TGCTGCGGCC CGGCGAGATG GTGTTCATCG TGGGCGACAA CGGCTCCGGC
AAGACCACGC TGATCAAGCT GCTGCTCGGC CTCTATGCAC CGCACGCCGG CGAAGTGCTG
CTCGACGGCG GCGTGGTGAT GCCACAGGGG CGCGACGACT ACAGGCAGCT GTTCGCGACG
GTGTTCTCGG ACTTCTACCT GTTCGAGGAC CTGGCGGCCG GCGAAGACGG CGCGGGCACG
GCCACGCTGC CGCAGACCGC GCTGCCTTAC CTGGAACGCC TGGAAATCGC GCACAAGGTG
AGCGTGAAGG ACGGCGCCTT CACCACCACC GATCTTTCGA CCGGGCAGCG CAAGCGGCTG
GCGCTGGTGC ATGCGTACCT GGAAGGCCGA CCGGTGCTGG TGTTCGACGA ATGGGCCGCC
GACCAGGATC CGGCGTTCCG GCACCTGTTC TACACGGAGC TCCTGCCCGA ACTGCGCGCC
AAGGGGCACC TGCTGGTGGT GATCTCGCAC GACGACAGGT ACTTCCACCT GGCCGACCGC
GTGGTCACGA TGCGCGCCGG AAAGATCGAG GAAGACAAGG CGTACGTCCC GCCCGAAAGC
CTGGCTGCAT GA
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| Protein sequence | MTPTTTTPRG NTSELGRLLK PFLPWVLLST VTGISAGAAT VALLGTINQV LNREGGMAGG
LLLTFVGLCA VALLGRMASD VSTNFVGQRL VAQVRKSLAQ KILSAPIDAL ERYRTHRLMP
VLSQDVDMIS DVAFVLSSTL IAFAIALGCL AYLAYLSLPL FCLLVVALAI GATIQTRAQV
RAEVGFWKAR EYEEQLHKTY RAISEGAKEF RMHRARRTRM FGGQIERIVD NIRTVNGRAI
NTYVMATAFG SALFFLLIAL ILGWAAFRPT EPAVLSGFVL VMLFLKGPVD QIAGALPGVG
RARIAFRRIA DLSARFATPE PHLHLERASN GVMLNREIAM RGVCYRFDAP EGGEAFTLGP
IDLLLRPGEM VFIVGDNGSG KTTLIKLLLG LYAPHAGEVL LDGGVVMPQG RDDYRQLFAT
VFSDFYLFED LAAGEDGAGT ATLPQTALPY LERLEIAHKV SVKDGAFTTT DLSTGQRKRL
ALVHAYLEGR PVLVFDEWAA DQDPAFRHLF YTELLPELRA KGHLLVVISH DDRYFHLADR
VVTMRAGKIE EDKAYVPPES LAA
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