Gene Vapar_3720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3720 
Symbol 
ID7973953 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp3918741 
End bp3919418 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content67% 
IMG OID644794304 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002945602 
Protein GI239816692 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.984063 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGACCC CCCGATTCTT TGCCGACAAG ATCTGCCCGG TGCGCGCCAA GCGCGAGCGC 
CGCAAGGAGG CGCGTCCGGG CGAACTGCTG GCGGCGGCGC TCGACCTGTT CGTCGAAAAA 
GGCTTTGCCG CCACCCGTGC CGAGGAAGTG GCGGCGCGCG CGGGCGTCTC CAAGGGCACC 
CTCTTTCTTT ACTTCCCGAG CAAGGAAGAG CTCTTCAAGG CCGTGGTGGT CGAGAACCTC 
GGCGGCCGGT TCGCCGAGTG GAACGACGAG TTCGAGGCCT TCGAGGGCAC CACGGCCGAC 
ATGCTGCGCT ACTGCATGCG CGTCTGGTGG GAGCGCGTGG GCATGACCAA GGCCTCGGGC 
CTGACCAAGC TCATGATGAG CGAAGGCGCC AATTTTCCCG AGCTGGCCGA GTTCTACCGC 
AAGGAGGTGG TGCGCCCGGG CCATGCGCTG CTGCGGCGCA TCCTGCAGCG CGGCATCGAC 
CGTGGCGAAT TCGCGCCGGT CGACATCGAC CACGCGATCT ACGCGGTGGT GGCGCCCATG 
ATCTTCCTGA TGCTGTGGAA GCATTCGGCC ATGGTCTGCG TCGACGCGGA CACCTCGCTC 
GACCCCGAAA AATACCTCGC CACGCAGGCC GAGACCGTGC TTTACGGCCT CACCCGGCAG 
CCCGGAGCCG CCGCATGA
 
Protein sequence
MPTPRFFADK ICPVRAKRER RKEARPGELL AAALDLFVEK GFAATRAEEV AARAGVSKGT 
LFLYFPSKEE LFKAVVVENL GGRFAEWNDE FEAFEGTTAD MLRYCMRVWW ERVGMTKASG 
LTKLMMSEGA NFPELAEFYR KEVVRPGHAL LRRILQRGID RGEFAPVDID HAIYAVVAPM 
IFLMLWKHSA MVCVDADTSL DPEKYLATQA ETVLYGLTRQ PGAAA