Gene Vapar_3701 details

Gene Information

• Locus tag: Vapar_3701
• ID: 7973934
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3901677
• End bp: 3902363
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644794285
• Product: ABC transporter related
• Protein accession: YP_002945583
• Protein GI: 239816673
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTCCC CTCTTTCCAT CGAATCGATC CAGCTCGCCT ACGAAACGCC GCGCGGCCTG 
CATGCCGTGG TCAACGACTT TTCGCTTTCG CTGCGCGCCG GCGAGATCGC CTGCCTGTTC 
GGCCCCTCGG GCTGCGGCAA GACCACGGTG CTGCGGGCGA TCGCGGGCTT CGAGCCGCTG 
CGCGCGGGCG CCATCCGGCT CGGCGACGTG CTGCTCTCCT CCACCCAGGT GCACCTGCCG 
CCCGAGCAGC GGCGCGTGGG CATGATGTTC CAGGAGTACG CGCTGTTTCC CCATCTCTCG 
GCCAGCCGGA ACGTGGCCTT CGGCCTGCGC CGCTCGAGCC GTGCGCAGCA GCAGGCCCGC 
GTGGCCGAGA TGCTGGCGCT GGTGGGCCTG GCCGATGCCG GCGAGCGCTT TCCGCATGAG 
CTGTCGGGCG GGCAGCAGCA ACGCATTGCG CTCGCCCGCG CACTGGCGCC TTCGCCCGAA 
CTGCTGCTGC TCGACGAGCC GTTCTCCAAC CTCGACGGCG GCACGCGCGA GCGCCTCACG 
GCCGAGGTGC GCGGCATCCT CCGGCGCGCC GGGCAGACCG CGATCCTGGT CACCCACAAC 
GAGGCCGAGG CCCATGCCAT GGCCGACCGC ATCGGCGTGA TGCACGGCGG CCGCATCACG 
CACTGGCTGG ACACCACTGC CAAATAG 

 

Protein sequence

MSSPLSIESI QLAYETPRGL HAVVNDFSLS LRAGEIACLF GPSGCGKTTV LRAIAGFEPL 
RAGAIRLGDV LLSSTQVHLP PEQRRVGMMF QEYALFPHLS ASRNVAFGLR RSSRAQQQAR 
VAEMLALVGL ADAGERFPHE LSGGQQQRIA LARALAPSPE LLLLDEPFSN LDGGTRERLT 
AEVRGILRRA GQTAILVTHN EAEAHAMADR IGVMHGGRIT HWLDTTAK