| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3694 |
|---|
| Symbol | |
|---|
| ID | 7973927 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3894173 |
|---|
| End bp | 3895591 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644794278 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_002945576 |
|---|
| Protein GI | 239816666 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCAT CGACGTCCGC AGACCTCGAC CCGCGCACGC GCCGCCTGCT CGAGGCGCCG
ATCGTGCCCA CGCTGCTGCG CCTGGCCGCG CCCAACGTGC TCGTGATGGT GGCGCAAGCC
TCCGTCGGAC TCATCGAAAC CTACTTTGTC GGCAAGCTGG GCACCCATGC GCTCGCGGGC
ATGGCGCTGG TGTTTCCCAT CGTCATGCTG ATGCAGATGA CATCGAGCGG CGCAATGGGC
GGTGGCATCG CCTCGTCGAT CGCCCGTGCG CTGGGCGCGC GCCGCCGCGC CGACGCCGAC
GCGCTGGTGT GGCATGCGGT GGCCATCGCG ATCGGCTTCG GCCTGTGCTT CTCGCTCGCG
CTGCTGGGTG GCGGGCGCTG GCTCTATACC CTCATGGGCG GCACCGGCGC GGCGCTCGAT
GCGGCCTTGA CCTACTCGAA CTGGGTGTTC GCGGGCGCGG TGCTGGTGTG GCTCTTCAAT
TCGCTCTCGG CCATCATCCG CGGCACCGGC AACATGGCGG TGCCGGCGAA CGTGACGGTG
GTGGGCGTGG TGTTCCTCGT TCCGGCATCG CCGCTCCTGA TCTTCGGCTG GGGTCCGCTG
CCGGGCATGG GCATCGCGGG CGGCGCGATG GCGCTGCTGC TGTACTACCT GCTGGGTTCG
GTCGCGCTCA TCGTCTACCT GCGCTCGCCG CGCAGCCTGC TGCGTCCCAC GCTCGCCGCA
CTGAAGCTGC GCTGGCCGCT GTTCCGCGAC ATCCTGCGCA TCGGGCTGGT GGGCGCGGTA
TCGACGGTGG CCACCAACCT CTCGATCGGC ATTGCCACGG CCTTGACCGG GCACTTCGGC
TCGGGCGCGC TGGCGGGCTA CGGCACCGCG TCGCGGCTCG AATACCTGCT GGTGCCGCTG
GTGTTCGGGC TGGGCGCGCC GCTGGTCGCG ATGGTCGGCA CCTGCATGGG CGCGGGGCAG
CGGGAGCGCG CGCTGCGCGC CACCTGGGCC GGCGCGGCGC TGGCCTTTGC GCTGACCGAA
ACCATCGGCC TTGCCGCGGC GCTGTTCCCG CGGCCATGGC TGCTGCTGTT CGGCAGCGAC
GCCGCCATGC TCGAAACCGG CGCGCACTAC CTGCGCGTGG TGGGGCCGCT CTACGGCTTC
TTCGGCGTGG GGCTGGTGCT GTACTTCGCT TCGCAGGGCG CGGGGCGCCT GCTGTGGCCG
GTGCTCGGCA ACATCGCGCG GCTCGCGGTG GCCGGCGTGG GTGGCTGGCT GGCCCTGCGC
TGGGGCGGCG GACTGGCCGG CGTGTTCGCG GCGCAGGGGG CGGCGCTGGT GGTGTACGGC
ATCGTCATCG CCTCGGCGAT TGCCGGCGGT GCCTGGTTCG GCCGCGTGGG CTGGCCGCGC
ACCACCCGCG GCCTGCTGCA GCGCGTGGCG CAGGCCTGA
|
|---|
| Protein sequence | MTASTSADLD PRTRRLLEAP IVPTLLRLAA PNVLVMVAQA SVGLIETYFV GKLGTHALAG
MALVFPIVML MQMTSSGAMG GGIASSIARA LGARRRADAD ALVWHAVAIA IGFGLCFSLA
LLGGGRWLYT LMGGTGAALD AALTYSNWVF AGAVLVWLFN SLSAIIRGTG NMAVPANVTV
VGVVFLVPAS PLLIFGWGPL PGMGIAGGAM ALLLYYLLGS VALIVYLRSP RSLLRPTLAA
LKLRWPLFRD ILRIGLVGAV STVATNLSIG IATALTGHFG SGALAGYGTA SRLEYLLVPL
VFGLGAPLVA MVGTCMGAGQ RERALRATWA GAALAFALTE TIGLAAALFP RPWLLLFGSD
AAMLETGAHY LRVVGPLYGF FGVGLVLYFA SQGAGRLLWP VLGNIARLAV AGVGGWLALR
WGGGLAGVFA AQGAALVVYG IVIASAIAGG AWFGRVGWPR TTRGLLQRVA QA
|
|---|
| |