| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3678 |
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| Symbol | |
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| ID | 7973911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3877037 |
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| End bp | 3878431 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794263 |
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| Product | TRAP transporter solute receptor, TAXI family |
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| Protein accession | YP_002945561 |
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| Protein GI | 239816651 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCATGC CCAAGACACT GAAGCTGATC CTGCTGTCGA TCCGCGACCT GATCGCCTCG
GCCGGTCCCG TCGTGTTCCT CGTGATCGGC CTCCTGATTG CCGCCTACTG GTGGCTGCAG
CCGCAGCCGC CCAAGCATGT GACGCTGGCG ACCGGCCCCA CCGGCAGCGC CTATTCGCAG
TTCGGCAAGC GCTATGCCGA GCTGCTCAAG AGCAGCGGCA TCGAGGTGGA GCTGAAGGCC
ACCACGGGCT CTTCCGAAAA CCTCGAACTG CTGCGCAGCG GCGGCGCCGA CGTGGGCTTC
GTGCGCGGCG GCAGCGCCGA CCCGGTGGCC GACGAGGAAG CCGGCCTCAC CTCGCTCGGC
AGCCTGTTCT TCGAGCCGAT CTGGCTCTTC TACCGCACCG ACAGCGCGCA GAAGATCGAC
CGCAAGACGG CCACGCTGAC TTCGCTCGCC CAATTGCGCG GCCTGCGCGT GAACGTCGAC
CTGGCGGGCA GCGGCCTGCC CGAGATCATG GAAAGGCTCT TCAAGGCCAA CCACCTCGAG
CCCGATGCGC TGCTGCTTTC CAACCTCGAA CAGGCGGCCG CGGCCGAAGC GCTGCAGGCC
GGCCTGCTCG ATGCCATCGT GCTGTCCTCG GCGCCGCAGT CGCCGCAGGT GCAGCGGCTG
CTGCGCGCGC CCGACATCAA GCTCATGGAC TTCGGCCAGG CCGATGCGTA CACGCGGCGT
TTTCCGTTTC TCTCGGCGGT GACGCTGCCG CGCGGCGTGG TCGACCTGTC GAAGGACCTG
CCGCCCACGG ATGTCTCGCT GCTCGCGGCC ACCACCTCGC TGCTTTCGCG CGACAAGACC
CACTCCGCGC TGCGCCAGCT CTTCGCAGAG GCCGCGCAGA GCGTGCACAG CGACGCCGGC
TGGTTCAACC GCGCGCGCGA CTTTCCCAAC ACGCGCACCA GCGAACTGCC CGTGAGCCCC
GAGGGCGACC GCGCCATCAA CGGCACGCCG CCGTTCTGGC AGCGCTACCT GCCGTTCTGG
GCCAGCAACC TGATCGAGCG CATGTGGCTG GTGCTCGGCG GCCTGCTGGT GCTGATGCTG
CCGCTGAGCC GCGTGGTGCC GCCGCTCTAC CAGTTCCGCG TGCGCCGCCG CGTGTTCCGC
TGGTATGCGC GGCTGCGCGA CATCGAGGCC AAGGTCGATG CGCGCCAGGG CGGGCGCGAC
GAACTGCTCG ACGAACTCGA GGAGCTCGAC CGCGTGGTCA ACAAGGTGGC CGTTCCGCTG
TCGTATGCCG ACGAGCTCTA TGCGCTGCGC AACAACATCC ACACGGTGCA AAGGCGCGTG
CAGATGCGCT GGCCGCAGCC CGGCGATTTC GCGCCCCGCA CACCGCCGAC CGAAGAAACC
GCAAAAAGCG CTTGA
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| Protein sequence | MAMPKTLKLI LLSIRDLIAS AGPVVFLVIG LLIAAYWWLQ PQPPKHVTLA TGPTGSAYSQ
FGKRYAELLK SSGIEVELKA TTGSSENLEL LRSGGADVGF VRGGSADPVA DEEAGLTSLG
SLFFEPIWLF YRTDSAQKID RKTATLTSLA QLRGLRVNVD LAGSGLPEIM ERLFKANHLE
PDALLLSNLE QAAAAEALQA GLLDAIVLSS APQSPQVQRL LRAPDIKLMD FGQADAYTRR
FPFLSAVTLP RGVVDLSKDL PPTDVSLLAA TTSLLSRDKT HSALRQLFAE AAQSVHSDAG
WFNRARDFPN TRTSELPVSP EGDRAINGTP PFWQRYLPFW ASNLIERMWL VLGGLLVLML
PLSRVVPPLY QFRVRRRVFR WYARLRDIEA KVDARQGGRD ELLDELEELD RVVNKVAVPL
SYADELYALR NNIHTVQRRV QMRWPQPGDF APRTPPTEET AKSA
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