| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3663 |
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| Symbol | |
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| ID | 7973896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3863638 |
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| End bp | 3865335 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794248 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_002945546 |
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| Protein GI | 239816636 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.717786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACCAC GCCCGCACCA CAAGTTCTGG CCCAAGCGCC TGCCGCATTC GATCACCGTC
CCCGCCACCT CGCTGTGGCA CAACCTCGCA ATCTCGGCGG CGCGCTATCC GGACAAGGCC
GCGCTGGTCT TCTTCGGCCG GGTGCTGAGC TACCGCGGCT TCGCGGACCA GGTCGAGCGG
CTGGCCGGCA CGCTGCATGC CCTGGGCGTG AAGCGGGGCG ACCGCGTGGT GCTGGACATG
CAGAACTGCC CGCAACTGGT GGTCGCTCAT TTCGCGATCC TGCGCGCCAA TGCGGTGGTG
GTGCCCGTCA ACCCGATGAA CCGGGCCGAG GAGCTCAAGC ACTACATCGT CGACCCCGAT
GCCAAGGTTG CCATCACCAC CGGCGACCTC GCCGGCGAGC TTGCCAAGGC CAGCAACGCG
CTGCCGCCCG CGCAGCAGCT GGCCCACATG ATCGTGACCC AGTTCACCGA CGCCTTCGAC
GCCGATGCGA GCGGCGACGA CGCTCCGGCG CCGGCCTGGA AGGAATGGCT CGCCACGCGC
CATCCGCTGC CCGAGCTGGC GGGCGGCAAG GCCATGGCCT GGACCGACGC GCTGGCCGCG
GGCCATGCCG CGCCCGAGCA CGTGGTGGGC GCCAACGACA TGGCGCTGCT GCCCTACACC
AGCGGCACCA CCGGCCTGCC CAAGGGCTGC GTGCACCACC ATTCGAGCCT CATGCACAAC
GCGGTGGCCG GCCAGCTCTG GGGCCAGGCC ACCTCGGAAG CGGTGGTGCT GGCGGTGGTG
CCCATGTTCC ACATCACGGG CGTGGTGAGC ATGATGCACA CCTCCATCCT CGCGGCGGCC
ACGCTGGTCA TCATGCCGCG CTGGGACCGC GAGGTGGCGG GCCGGCTCAT CTCGCGCTGG
AAGGTCACGA GCTGGACCAA CATCCCCACC ATGGTGATCG ACCTCATGGC CAGCCCCAAC
TTCGCGAGCT ACGACCTGTC GAGCATCACG CACATCGGCG GCGGCGGCGC GGCCATGCCG
CAGGCCGTGG CCCAGCGCCT CTTCGAGCAG TACGGCCTCA AGTACCAGGA GGGCTACGGC
CTCACCGAAA CCGCCGCGCC CTCGCACACC AACCCGTCGG ACCATCCCAA GCAGCAGTGC
CTGGGCATTC CGTTCATGAG CACCGATGCG CGCGTGGTCG ACCCCGACAC GCTGGCCGAA
ATGCCCATCG GCGAATCGGG CGAGATCATC ATCCACGGGC CCGAGGTGTT CCAGGGCTAC
TGGAAGCGCC CCGACGCCAC CCAGGCGGCC TTCGTCGAGT TCGAGGGCAA GCGCTTCTTC
CGCTCGGGCG ACATGGGCCG CATGGACGAG GACGGCTACT TCTTCATGAC CGACCGCCTG
AAGCGCATGA TCAACGCGAG CGGCTTCAAG GTGTGGCCGG CCGAGGTCGA GCTGCTGATG
TTCCGCCATC CCGCGATCCA GGAGGCCTGC GTCATTTCCA CGCGGGACGA CTACCGCGGC
GAATCGGTCA AGGCGGTGGT GGTGCTGCGC GCCACGCACA AGGACACCAC CGAGCAGCAG
ATCATCGACT GGTGCCGCGA GAACATGGCG GTCTACAAGA TCCCGCGCAA GGTGCAGTTC
GTCGACGCGC TGCCCAAGAG CGGCAGCGGC AAGGTGATGT GGCGGCTGCT GCAGGAAGAC
GAGAACGGCG CGCGGTAA
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| Protein sequence | MQPRPHHKFW PKRLPHSITV PATSLWHNLA ISAARYPDKA ALVFFGRVLS YRGFADQVER
LAGTLHALGV KRGDRVVLDM QNCPQLVVAH FAILRANAVV VPVNPMNRAE ELKHYIVDPD
AKVAITTGDL AGELAKASNA LPPAQQLAHM IVTQFTDAFD ADASGDDAPA PAWKEWLATR
HPLPELAGGK AMAWTDALAA GHAAPEHVVG ANDMALLPYT SGTTGLPKGC VHHHSSLMHN
AVAGQLWGQA TSEAVVLAVV PMFHITGVVS MMHTSILAAA TLVIMPRWDR EVAGRLISRW
KVTSWTNIPT MVIDLMASPN FASYDLSSIT HIGGGGAAMP QAVAQRLFEQ YGLKYQEGYG
LTETAAPSHT NPSDHPKQQC LGIPFMSTDA RVVDPDTLAE MPIGESGEII IHGPEVFQGY
WKRPDATQAA FVEFEGKRFF RSGDMGRMDE DGYFFMTDRL KRMINASGFK VWPAEVELLM
FRHPAIQEAC VISTRDDYRG ESVKAVVVLR ATHKDTTEQQ IIDWCRENMA VYKIPRKVQF
VDALPKSGSG KVMWRLLQED ENGAR
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