| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3659 |
|---|
| Symbol | |
|---|
| ID | 7973892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3859226 |
|---|
| End bp | 3860245 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794244 |
|---|
| Product | methyltransferase |
|---|
| Protein accession | YP_002945542 |
|---|
| Protein GI | 239816632 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4301] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR03438] probable methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAATC CAAGCTCCTC GTCCTCCTTT TCGTTTGCCG CCGCCCAGCC GCAGCAGCGC
CAGCCTGTCG CGCCTGCCGC CGCGGAAAAA AATGCGGCGC TGCTCTCCGA GTTCGGCCGC
GAGATGCAGG CGGGCCTCGC GCGCAGGCCG CGCAGCATTT CGCCCAAGTA TTTTTACGAT
GCCGCGGGTT CGCAGCTGTT CGACCGCATC TGCGAGCTGC CCGAGTACTA CCCCACGCGC
ACCGAGCTGC GCATTCTTGG CGAATGCGCG GGCGAGATCG CCGCGCAGGT GGGTCCGGGC
GCCGAGATCG TCGAGTTCGG CGCCGGCTCG CTCACCAAGG TGCGGCTGCT GCTCGATGCG
CTCGAGGCGC CCAGGCGCTA CCTGCCGATC GACATTTCCG GCGAGCACCT GGCGGCCGCC
GCCGAGCGGC TCAGGGCCGA CTACCCGCAG CTGGCGGTGC AGCCGATCGC GGCCGACTAC
ACCATGCCGC TGGTGCTGCC CGCGCCGCTC GCCGGTGCGG GCAAGCGCGT GGGTTTTTTC
CCCGGCTCGA CGATCGGAAA TTTCGAGCCC GACGAGGCAC TGGCCTTCCT GCAGCTCGCG
GCGCGCATGC TGCGCGGCGG CGGCCTGCTG ATCGGCGTCG ACCTGGTGAA GGACCCGGCC
CGCCTGCATG CCGCCTACAA CGATGCGCAG GGCGTGACCG CGGCCTTCAA CCTCAACCTG
CTGCGGCGCG CCAATGCCGA GCTCGACGCG AACTTCGATC TCGAGGGCTT TGCGCACGCG
GCGTTCTACA ACGCGCCGAA GCAGCGCATC GAGATGCACC TGGTCAGCCG GCGGGACCAG
ATCGTTTCAC TGAACGGCGA GCGGTTTGCG TTCGAGGAAG GGGAGACCAT TCACACCGAG
TACTCGCACA AATTCACCGT GGAAGGGTTG CGGGCGCTGG CGGTGAAGGC GGGGTTCCGG
CCGGGGGCGG TGTGGACGGA TCCGGAGAGG CTCTTCAGCG TGCATTGGTT GGGGGCTTGA
|
|---|
| Protein sequence | MRNPSSSSSF SFAAAQPQQR QPVAPAAAEK NAALLSEFGR EMQAGLARRP RSISPKYFYD
AAGSQLFDRI CELPEYYPTR TELRILGECA GEIAAQVGPG AEIVEFGAGS LTKVRLLLDA
LEAPRRYLPI DISGEHLAAA AERLRADYPQ LAVQPIAADY TMPLVLPAPL AGAGKRVGFF
PGSTIGNFEP DEALAFLQLA ARMLRGGGLL IGVDLVKDPA RLHAAYNDAQ GVTAAFNLNL
LRRANAELDA NFDLEGFAHA AFYNAPKQRI EMHLVSRRDQ IVSLNGERFA FEEGETIHTE
YSHKFTVEGL RALAVKAGFR PGAVWTDPER LFSVHWLGA
|
|---|
| |