| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3595 |
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| Symbol | |
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| ID | 7970670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3800585 |
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| End bp | 3801262 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794180 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002945478 |
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| Protein GI | 239816568 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.414086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCTCCT CGGAAGCCGC CGAAACCGTT TCGCTGAGCT CGGTGCTCGT GGTCGAAAAC
GACACGGCAA TGCAGGAACG CCTGCGTTAC ATCCTGCCCA CGCTCGGCTG CGACGAGCCG
CAGATCACCT GGGCCGACGA TGCCGAGATG GCCATGCAGC TGCTGGAAAA GCCGAGCTTC
GGCGTGATGC TGGTGGACAT CGGCCCGCCT GGCGACGACG CGGTCGAGCT CGTCGAATGG
CTGCAGGCCC ACCATCCGCA AGTGCCCGCC GTGGCCATTT CCGCCTCCCG CAGCGAAGAA
GCCATTTTTT CCGCACTCCG CGCCGGCGCG GTGGCCTATC TCCTGAAGGA GCGCGACGAC
CTCGAGCTGA GCATCGGCCT GCGCAGCATC GAGCAGGGCG GCGCCACCAT CGATCCGGCC
ATTGCGCGGC GCGTGCTGGC CTGGCATGCG GGGCAGGCGG CCGATCCGGG GTCGATGCCC
GAAGCGGCGC TGACGCCGCA GGAGCGCAAG ACGCTCGAAC TGGTGGTGCA GGGGCTCGAG
CACCGCGACA TCGCCCAGGC GCTGGCCATG CCCCGGCTGG CGGTGGAATG CCGCATCAAG
GGCATCTACA GAAAGCTGGC GCTCGGCTCG CGCGCCGAGA CGGCGCACAT GGGCGGCGGG
CACGCCCTGG CGCGCTGA
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| Protein sequence | MFSSEAAETV SLSSVLVVEN DTAMQERLRY ILPTLGCDEP QITWADDAEM AMQLLEKPSF
GVMLVDIGPP GDDAVELVEW LQAHHPQVPA VAISASRSEE AIFSALRAGA VAYLLKERDD
LELSIGLRSI EQGGATIDPA IARRVLAWHA GQAADPGSMP EAALTPQERK TLELVVQGLE
HRDIAQALAM PRLAVECRIK GIYRKLALGS RAETAHMGGG HALAR
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