Gene Vapar_3578 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3578 
Symbol 
ID7970653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3776977 
End bp3777606 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content67% 
IMG OID644794163 
Producthypothetical protein 
Protein accessionYP_002945461 
Protein GI239816551 
COG category[S] Function unknown 
COG ID[COG4278] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.300421 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCCATT CCACCCAGCG CAAGACACTG GAGCAGACGA TCGCCGCCAT CGAGGCGATC 
GACCTCACGC CGATCAAGTT CAAGGCCTGC CGCAAAGAGG ACGGCTACGG CTGGTCGGCC 
GGCTACGCGG ACCAGATGGA GGTGGCCTAC AAACGCTACC TGATACTGCA CGCCAGGCAC 
CCCGAGCTGA CGCTCGCTCC CGAGCAGGAC GTCGACCGCT TCTGGCACAT GCACATCCTC 
GACACGAGAA AGTACGCGGC CGATTGCGAA ACCACTTTCG GCTACTTCCT GCACCACTTT 
CCGTACCTCG GCCTGCGCGG CGAGGAAGAC GCCAAGGCGC TGCAGGCGGC CTTCCTGGAG 
ATGCAGCGCC TGACCGCCGA GGAATTCGGC GAGCCGGCGG CCGCAGCCCG ATACGCGCCG 
GGCAAGGATG CGCCCGCATG GTGCTCGCTC GAGGCGGGCA AGCCTGCAGC CGCATGGTGT 
TCGCTCGAGG CGGGCAAGCC CGCAGCGGCA TGGTGTTCGC TCGAGGCGGG CAAGCCCGCG 
GCCGCATGGT GTTCGCTGGA GGCGGGCGCT GCCTCCGCGT CTGAACTGGC CGCTTCTGCT 
CGCAGGGCCT CGCTTGGCGT GAACAGGTGA
 
Protein sequence
MIHSTQRKTL EQTIAAIEAI DLTPIKFKAC RKEDGYGWSA GYADQMEVAY KRYLILHARH 
PELTLAPEQD VDRFWHMHIL DTRKYAADCE TTFGYFLHHF PYLGLRGEED AKALQAAFLE 
MQRLTAEEFG EPAAAARYAP GKDAPAWCSL EAGKPAAAWC SLEAGKPAAA WCSLEAGKPA 
AAWCSLEAGA ASASELAASA RRASLGVNR