| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3572 |
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| Symbol | |
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| ID | 7970647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3770856 |
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| End bp | 3771824 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794157 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002945455 |
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| Protein GI | 239816545 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCCA TGAACAACTT TGCACGCCTC AAGCTGCGCC ACCTGCAATG CCTGGTGATG
GTGGCGCAGG AGCGCAACCT CGTGCGCGCG GGCAAGGCCC TGGCGCTCAC GCAGCCCGCG
GTGTCCAAGA CCATCGCCGA ACTCGAGGAG ATCGTCGGGC GCCAGTTGCT GCTGCGCCGC
CGCCGCGGCG TCGAGCTCAC GCCGGCGGCC GAGGTGCTGG TGCGCCATGC CGTCTCCGCG
CTGCGCGGAC TGCGCGAAGG CATGGGCCTG GCCATGGACC AGCCCGAAGC CGACCAGCTG
CGCGTGGCCG TGGGTGCCCT GCCCAACATG GCGGCCAACC TGCTGCCCGA GGCCGTCGCG
CGGCTGTATG CCTCGCACCC GGCGCTGCGC GTGCGCGTGG TGAGCGGCAC CAATGCGCAG
CTGATGACGC AGCTGCGCCA GGGCGAGATC GACCTGGTGC TCGGCCGCCT CGCGCAAGCC
TCGGCCATGG CCGACCTGGC GTTCGAACAG CTCTACAGCG AACCGCTGCT GCTGGTGGTG
CGACCCGGCC ATCCGCTCGC CGCGCGGCGC AGGCCCACGC TCGATGCATT GGCCGCCCAT
CCGCTGGTGC TGCCGGTCTC GGGCACGCTG ATCCGGCACA CGGCCGATGC CTTCCTGATC
GCGCAGGGCA TGGCGCTGCC CAGCCGGCTG GTGGAGGCGA CGGACACCAG CTTCGTGGTC
GGGCTGCTGC AGCGCTGCGA TGCGGTGTGG TTTGCGCCGC AGGGTGCCGT CGAGGGCTTG
ATTGCACAGG GCGCGTTGAA GCGCGTGGCC ATCGACACCT CGGGCACCGA AGGGCCGGTG
GGCTTCACGG TGCGGCGCGG CGGCGAAGCG GGCGAGGGCG CGCGGCTGCT GGTCGAGGCG
ATCCGCGGCA TCGTCGCGGC CGCGGCGCGC GGCAACCTGG CCAATGCCGG CATCGGGAAA
CCCGCATGA
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| Protein sequence | MSAMNNFARL KLRHLQCLVM VAQERNLVRA GKALALTQPA VSKTIAELEE IVGRQLLLRR
RRGVELTPAA EVLVRHAVSA LRGLREGMGL AMDQPEADQL RVAVGALPNM AANLLPEAVA
RLYASHPALR VRVVSGTNAQ LMTQLRQGEI DLVLGRLAQA SAMADLAFEQ LYSEPLLLVV
RPGHPLAARR RPTLDALAAH PLVLPVSGTL IRHTADAFLI AQGMALPSRL VEATDTSFVV
GLLQRCDAVW FAPQGAVEGL IAQGALKRVA IDTSGTEGPV GFTVRRGGEA GEGARLLVEA
IRGIVAAAAR GNLANAGIGK PA
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