Gene Vapar_3545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3545 
Symbol 
ID7972171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3739813 
End bp3740355 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content73% 
IMG OID644794130 
Productnucleoside 2-deoxyribosyltransferase 
Protein accessionYP_002945428 
Protein GI239816518 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG3613] Nucleoside 2-deoxyribosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0510043 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACACAT CCCCCGACAA CCCGGCGCGC CCGCGGATCT ACCTTGCCGG CCCCGATGTC 
TTTCGCCCGG ACGCCAGGGA GCACTTCGTG CGGCTCGCGG CGGCCTGCGA CGCGCTGGGG 
CTGGCGGCCC TGCTGCCGGC CGACGGCAAC GAGGAGCCGG CTGCACAGGC GCCGGAAATG 
CAGATCTTCC AGGCCAACAT GCAGCGCCTT CGCGGCGCCG ACGGCGTGGT GGCCAACCTC 
GCGTGCTTCC GCGGCCTGGA GCCCGATTCG GGCACGGTGT TCGAGGTGGG CGCCGCGGTG 
GCGCTGCAGA TCCCGGTCGT GGCCTACGGC GTGTCCGCGG GCAGCTATGC CGACCGCGCC 
AGGGAGGCGC TGCAATGCGC GCCCGATGCG GCCGGGGTGC TGCGCGAGAG CGGCAGCGGC 
ATCGCGGTGG AGGACTTCGG GCAGCCGCTG AACCTCATGC TGGCCTGCTC GATCCACATC 
GCGCCGACGC CGGAAGCGGC GCTGCAGAAG ATGGCGGAAC TGCTCGCCGC ACCGGCGCGC 
TGA
 
Protein sequence
MDTSPDNPAR PRIYLAGPDV FRPDAREHFV RLAAACDALG LAALLPADGN EEPAAQAPEM 
QIFQANMQRL RGADGVVANL ACFRGLEPDS GTVFEVGAAV ALQIPVVAYG VSAGSYADRA 
REALQCAPDA AGVLRESGSG IAVEDFGQPL NLMLACSIHI APTPEAALQK MAELLAAPAR