| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3544 |
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| Symbol | |
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| ID | 7972170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3738883 |
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| End bp | 3739788 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794129 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002945427 |
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| Protein GI | 239816517 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0349237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGATTCG ATCTCACCGA CCTGCGGCTT TTCCTCCATG TGGTCGAGGC CGGCAGCCTC
ACGGCCGGCG CGGCACGCTC GCACATGACG CTCGCCTCGG CCAGCCAGCG CGTGCGCGGC
ATGGAAGACG CCCTCGGCAG CCCGCTGCTC ACGCGCCATG CGCAGGGCGT GCGCCCGACC
GAGGCCGGCC GCACGCTGCT GCACCATGCG CGCGTCGTGC TGCAGCAGAT GGAGCGCCTG
CGCGGCGAGC TCGGCGAGTA CGGCCAGGGC CTCAAGGGCC ATGTGCGGCT CATGTGCGGC
ACCTCGGCGC TGACCGAGCA CCTGCCCGAG GTGCTGAGCC GCTTTCTCAT GCAGCATCCG
CGCATCTCGG TCGACCTCGA GGAGCGCCCC AGCCCCGACA CCGTCGATGC ACTGCGCGGC
GGCCGCTGCG ACATCGGCAT CGTCTCGGAC GCCATCGACA CCGAGGGCCT CGAATGCCAT
CCGTTCCGCC GCGACGACCT GGTGCTGGTG ATGCCGCGCG GCCATGCGCT GGCCGGGCGC
CGGCGCGTGA TGCTGGCCGA GGTGATCGAC AGCGAATTCG TCGGCCTGCC CGCCGACAGC
GCGCTGCAGC TGCTGCTCAC GCAGCATGCC CGCGCGCTCG GCAAGCACCT GGCCTACCGC
GTGCGCGTGG GCAACTTCGA GGCCGTGTGC CGCATGGTGG CGCATGGCAT CGGCGTGGGC
ATCGTGCCGC AGACGGCGGC CGAACGCTGC GCCCGCTCGA TGAAGATCGC GCGCGCCGCG
CTCGGCGACG CCTGGGCCGA GCGCACGCTG ATGGCGTGCG TGCGCTCGTC GCAGGAACTG
CCGCTCAACG CGCGGCGCAT GCTTGAGCAC CTGGTGGCAC CGGTGGAACA GGTGGCGGCG
AAGTAG
|
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| Protein sequence | MRFDLTDLRL FLHVVEAGSL TAGAARSHMT LASASQRVRG MEDALGSPLL TRHAQGVRPT
EAGRTLLHHA RVVLQQMERL RGELGEYGQG LKGHVRLMCG TSALTEHLPE VLSRFLMQHP
RISVDLEERP SPDTVDALRG GRCDIGIVSD AIDTEGLECH PFRRDDLVLV MPRGHALAGR
RRVMLAEVID SEFVGLPADS ALQLLLTQHA RALGKHLAYR VRVGNFEAVC RMVAHGIGVG
IVPQTAAERC ARSMKIARAA LGDAWAERTL MACVRSSQEL PLNARRMLEH LVAPVEQVAA
K
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