| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3523 |
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| Symbol | |
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| ID | 7972149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3714664 |
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| End bp | 3715593 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794108 |
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| Product | nitrate ABC transporter, inner membrane subunit |
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| Protein accession | YP_002945406 |
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| Protein GI | 239816496 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
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| TIGRFAM ID | [TIGR01183] nitrate ABC transporter, permease protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.293551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCAGCG CTGTATTTCA TTCGCCGATG GACGCATCTC TCCCTCTCCC GCGTGCGGGA
GAGGGTCGGG GTGAGGGTGT GCCCCGCGCC GAAGCACCCT CGCAGCCCGC CCCTGTCGCC
AGGGAGCAAA AACCACGCAC CCCCATCGAC CTGCGCGCCT TCTGGATGCG CGTGCTGCCG
CCGCTCGCGG GCTTCGGCCT GCTGGTGCTG ATCTGGGAGC TGGTGGCCAT GAAGAGCACC
ACCGGCTTTC CGTCGCCGCT CGCGACCTGG CAGCAGGCGC TCACGGTGTT CAGCGACCCG
TTCTACAGCA AGGGGCCGAA CGACCAGGGC GTGGGCTGGA ACGTGCTCTC GTCGCTGCAG
CGCGTGGCGC TGGGCTTCGG GCTGGCGGCC GCGGTCGGCA TTCCGGCGGG CTTTGCGATC
GGGCGCTTCG AGTTTCTTTC GCGCATGTTC AATCCGCTCA TCAGCCTGCT GCGCCCGGTG
TCGCCGCTCG CGTGGCTGCC GATCGGCCTC TTGGTGTTCA AGGGCGCCAA CCCGGCGGCC
ATCTGGACCA TCTTCATCTG CTCGATCTGG CCGATGGTGA TCAACACCGC GGTCGGCGTG
CAGCGCGTGC CGAGCGACTA CATGAACGTG GCCAAGGTGC TGAACCTGTC GGAGTGGAAG
ATCTTCACGA AGATCCTGTT CCCGGCCGTG CTGCCCTACA TGCTGACCGG CGTGCGGCTG
GCCGTGGGCA CCGCCTGGCT GGTGATCGTG GCGGCCGAGA TGCTGACCGG GGGCGTGGGC
ATCGGCTTCT GGGTGTGGGA CGAGTGGAAC AACCTCAACG TCGCCAACAT CATCATCGCG
ATCTTCGTGA TCGGCATCGT CGGGCTGGTG CTGGAGTTCG CGCTCATCAA GCTCGCCACT
GCATTCACGT TCGAAGAGGT GAAGTCATGA
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| Protein sequence | MVSAVFHSPM DASLPLPRAG EGRGEGVPRA EAPSQPAPVA REQKPRTPID LRAFWMRVLP
PLAGFGLLVL IWELVAMKST TGFPSPLATW QQALTVFSDP FYSKGPNDQG VGWNVLSSLQ
RVALGFGLAA AVGIPAGFAI GRFEFLSRMF NPLISLLRPV SPLAWLPIGL LVFKGANPAA
IWTIFICSIW PMVINTAVGV QRVPSDYMNV AKVLNLSEWK IFTKILFPAV LPYMLTGVRL
AVGTAWLVIV AAEMLTGGVG IGFWVWDEWN NLNVANIIIA IFVIGIVGLV LEFALIKLAT
AFTFEEVKS
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