| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3477 |
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| Symbol | |
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| ID | 7972588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3661620 |
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| End bp | 3664274 |
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| Gene Length | 2655 bp |
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| Protein Length | 884 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794061 |
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| Product | protein of unknown function DUF214 |
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| Protein accession | YP_002945360 |
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| Protein GI | 239816450 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.892035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCCAC GGCCGCGGAA CTTGGCGCGC GGCGGCCACA ATCGCGTCAT GCGTGCCTTG
CTCTCCACCT TCTCATGGCA GGAACTGCGC CACCATCCCT GGCGCAACGC CGCGGCCGTG
CTGGCCGTGA TGCTGGGCGT GGCGCTCGCG TTCTCGGTGC AGCTGATCAA CGCTTCCGCG
CTCGATGAAT TCTCGAGCGC CGTGCGCTCG GTCAACGGCC AGCCTGATCT CGAAGTGCGC
GCCGTGCAGG GCAGCTTCGA CGAAGCGGTG TTCGCACGGC TCGCGCAGCA TCCGCAGGTG
GCGCTCGCGA GCCCGGTGCT CGAATTCCAG GGGCTCGCGC TGGCCGGCGA ACGCCAGCTG
CCGATGCGCG TGATCGGCAT CGATGCGCTG GCGCTGCCCA CCATCGCGCC AGCGCTGATG
CCGCAGCCCG GCAGGAACGC CGCGCGCTTT GCGATGCTCG CGCCGGGCCA TGTGTTTCTC
AACGCGGCGG CGCGCAGCGC GGTCGGGCTC CCGGCCGAAG CAACAGAAGG CCGCGTGGAG
ACGGTGCAGC TGCGCACCGG CGGCGGCGCC TGGCGGCAGC TCGAGGTGGC AGGCCACGTC
GCCGCCGGCG GCGCGGCGCT GGCGGTGCTG GACATCGGGG CCGCGCAGGA CCTGTTCGAC
AAGCTCGGCC AGCTCAGCCG CGTCGACCTG AAGCTCGCCC CCGGCACCGA CCGCGCGGCC
TTCACCGCAT CGCTGCAGCG TTCACCGGGC TGGCCCGCCG GCCTGCAGTT TGCCGAGCCC
GGCGATGCGG CCGAACGCGT GAGCAATCTC TCGCGCGCCT ACCGCGTCAA CCTGACGGTG
CTCGCGCTGG TGGCGCTTTT CACCGGGGCC TTCCTGGTGT TCTCGGTGCT GGCGCTCAGC
GTGGCCAAGC GCGCGCAGCA GTTCGCGCTG CTCGGCGTGC TGGGCCTGAC GCCGCGCGAG
CGCTTGCGCC TGGTGCTGGT CGAATCGCTG GTGCTGGGCC TGATCGGAAG CAGCGCCGGC
CTCGCGTTGG GCACAGCGCT CGCAGCCTTC GCATTGCGCG TGCTCGGCGG CGATCTGGGC
GGCGGCTACT TCGAGGGCGT GGCGCCCACG CTGCACTGGA GCAGTGCCTC GGCGCTGCTG
TACGGCGGGC TCGGCGTGCT CGCGGCACTG GTGGGTGGCT GGTGGCCCGC GCGCGCGGCG
CAGGCGCTGC CCGAAGCGCA AACGCTCAAG GGTCTGGGCG CCGCACCCGT GCAGAGCCAT
GGCCACTGGC CCGCGCTCGG CCTCATTGCC GCCAGCGCGG CGCTGGCCAA CATGCCGGCT
GTCGGCGGCA TTCCGATAGC GGCGTATCTC TCGGTGGGCT GCCTGCTGGT GGGCGGCATC
ACCGCGCTGC CCTGGCTCAT TGCGCTGCTG TACGACCGCA TCGCGCCTGT GTTCGCAGAG
CGCGTGCTGC CGATGCTGGC CATCGAGCGC GCACGGCGCA TGCGCGGCAC CGCGGCCGTG
GCGGTGAGCG GCGTGGTCGC GAGCCTGAGC CTTGCGGTGG CGCTCACGGT GATGGTGGCG
AGCTTTCGCG ATTCGGTCAC GCATTGGCTC GACGTGGTGC TGCCGGCCGA TCTTTATGTT
CGCGCCACCT CGAGCGGCCG CTCCGGCAAT TCGGGCACCC AGAGCAGCAG CGACACCGCC
ACCTTCGCGC CGGCCTTCGT GCAGGCGCTG GCACGGCTGC CGGGCGTGGA ACGCATCGGT
ACGCTGCGAA CCCGCTCGCT GCAGCTCGAC CCCGCGCAAC CCGCCGTCAC GCTGATCGCG
CGAAGCCTCG AAGGCGGCGC ATCACAGGCG CTGCCGCTGG TGGGCCCCGC GCTGCCGGTG
CCCGCCGGCC AGGTCGGCAT CTACGTGAGC GAGCCGATGG TCGAGCTGTA TGGCGCGAAG
CCAGGTTCGC TCTTTGCGCC GCTTTCGCCG GCATTGGCCA CCGCGGGCTC TCCCCCGGCT
GCGTTCTTCG TCGCGGGCGT GTGGCGCGAC TATGCGCGGC AGTTCGGCGC CATCACGATG
GACGCGCGCG ATTTCGAGCG CCTGACGGGC GAACGCAACG TGAGCGACGT GTCACTGTGG
CTCGCGCCCG GCACGTCCGA GGGCGCGGTG CAGGCGGCGG TGCGCGAGCT GGCGGCACGC
GGCGACGGCT CCGATTCGAC TGCGACGAAC GTCGAGATCT CGTCGGTCGG ACAGATCCGC
GCCACCTCGC TGCGCATCTT CGACCGCAGC TTTGCAGTGA CCTACTGGCT GCAGGCCGTG
GCCATTGCCA TCGGCCTGTT CGGCATTGCC GCGAGCTTCA GCGCGCAGGT GCTGGCGCGG
CGCAAGGAGT TCGGACTGCT CGCGCACCTG GGCTTCACGC GGCGGCAGGT GCTGGCGGTG
GTGGCGGGCG AAGGCGCGGC GTGGACCGCG ATCGGCGCCG TGGCGGGGCT CCTGCTCGGG
CTCGCGGTGT CGGTGGTGCT GGTGAAGGTG GTCAATCCGC AGAGCTTTCA CTGGACGATG
GACCTGCTGG TGCCCTGGGG ACGGCTGCTG GTGCTCTGCG CTGCCGTGGT TGCTGCGGGG
ACGGTGACTG CGTGGCTGGC GGGGCGGGCT GCTGCGGGGA GGGATGTTGT TTTGGCTGTG
AAGGAGGATT GGTAG
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| Protein sequence | MVPRPRNLAR GGHNRVMRAL LSTFSWQELR HHPWRNAAAV LAVMLGVALA FSVQLINASA
LDEFSSAVRS VNGQPDLEVR AVQGSFDEAV FARLAQHPQV ALASPVLEFQ GLALAGERQL
PMRVIGIDAL ALPTIAPALM PQPGRNAARF AMLAPGHVFL NAAARSAVGL PAEATEGRVE
TVQLRTGGGA WRQLEVAGHV AAGGAALAVL DIGAAQDLFD KLGQLSRVDL KLAPGTDRAA
FTASLQRSPG WPAGLQFAEP GDAAERVSNL SRAYRVNLTV LALVALFTGA FLVFSVLALS
VAKRAQQFAL LGVLGLTPRE RLRLVLVESL VLGLIGSSAG LALGTALAAF ALRVLGGDLG
GGYFEGVAPT LHWSSASALL YGGLGVLAAL VGGWWPARAA QALPEAQTLK GLGAAPVQSH
GHWPALGLIA ASAALANMPA VGGIPIAAYL SVGCLLVGGI TALPWLIALL YDRIAPVFAE
RVLPMLAIER ARRMRGTAAV AVSGVVASLS LAVALTVMVA SFRDSVTHWL DVVLPADLYV
RATSSGRSGN SGTQSSSDTA TFAPAFVQAL ARLPGVERIG TLRTRSLQLD PAQPAVTLIA
RSLEGGASQA LPLVGPALPV PAGQVGIYVS EPMVELYGAK PGSLFAPLSP ALATAGSPPA
AFFVAGVWRD YARQFGAITM DARDFERLTG ERNVSDVSLW LAPGTSEGAV QAAVRELAAR
GDGSDSTATN VEISSVGQIR ATSLRIFDRS FAVTYWLQAV AIAIGLFGIA ASFSAQVLAR
RKEFGLLAHL GFTRRQVLAV VAGEGAAWTA IGAVAGLLLG LAVSVVLVKV VNPQSFHWTM
DLLVPWGRLL VLCAAVVAAG TVTAWLAGRA AAGRDVVLAV KEDW
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